Detail information of BGIOSGA016367_circ_igg.1


General Information
CircRNA Name BGIOSGA016367_circ_igg.1
ID in PlantcircBase osi_circ_014345
Alias Chr04:21007836_21008894(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 18280379-18281438  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA016366_circ_ig.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCCATTGATGTGGCGGCACGGGTTCGTGAAGTGCTTGCAGAGCGTGGATGGACAGTGGGGTAA
TGGCAACCAACGTAGAGAAAGAAGAATGCCATTTCGggaaactgtaattacgatgtaggccttg
ccaagaagttgataagctcactacacaatgttctgaagacctgtggaagtgtcagggtttcatt
ttccagaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGAAACTGTAATTACGATGTAGGCCTTGCCAAGAAGTTGATAAGCTCACTACACAATGTTCTGA
AGACCTGTGGAAGTGTCAGGGTTTCATTTTCCAGAAGAACACCACATAAGGTAGGACCTTGAAT
TGTCCATTTTTTCTTAGTAGGTGCCAGTACTTAAATTTCTAAATCATTTGTTGGCAGGTGTCTG
ATCTTATATTGAAAGAGTTCAGTACACACCCTAAGGTTTATATTTGGAATGGTGAAGGTAGTAG
TCAAAAGCCTAAAATGAGACATGTCTGATGTACTCATCTTTATGTGCTCTACGAAAGTTTTCTC
AGCCAGTTTTCTTGATGCAGGACCCAACCCACACCTTGGGCATCTTGCATGGGCTGATGCTTTT
GTCATAACAGCAGACTCAATTAGTATGCTAAGTGAGGCATGTAGCACTGGGTGAGCTTATATTA
TTCATCTGTATCTTTTCACTATTTTTTTTATTTGTATAACTGACCTTCCTAACATTTCTATTTA
CAGGAAACCTGTTTATGTTGTTGGAACTGAGCACTGCAGGTGGAAATTCTTGGATTTTCACAAC
AGGCTGCATGAAAGAGGTGCTGTCCGCCCTTTCACTGGACTGGAAGATGTAAGTTCGCTAAATA
TTCACGTATAGTGGATCAATTGAGGTTTTATACAGTCCTGGTTATTTCAATTGCCCCCTCCCAC
ACGTGCTTCATTTTCCCGAGTAGGCGATGTTGAGTCTTTTCTGATGCAATCGTTTCTGTTATCC
ATCTGTTTCTTTTTTCACCGGAATGACTGAAGGAGGTCATTCAATGTAATTAAGATAATTATCC
ATCTGTTTCACCGTGATGAAAGTTTTGAAAATACTCAATATGAAGATATAATTATCTTAGGGAC
GAATTATCACCCTTCTTTTTTCTCCATAGATGTCAGACAACTGGAGCTACCCTCCCCTGAACGA
TGCCATTGATGTGGCGGCACGGGTTCGTGAAGTGCTTGCAGAGCGTGGATGGACAGTGGGGTAA
TGGCAACCAACGTAGAGAAAGAAGAATGCCATTTCG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021