Detail information of BGIOSGA016366_circ_ig.1


General Information
CircRNA Name BGIOSGA016366_circ_ig.1
ID in PlantcircBase osi_circ_014344
Alias Chr04:21005801_21008894(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 18278346-18281438  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA016367_circ_igg.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCCATTGATGTGGCGGCACGGGTTCGTGAAGTGCTTGCAGAGCGTGGATGGACAGTGGGGTAA
TGGCAACCAACGTAGAGAAAGAAGAATGCCATTTCGgcgtgctataaggccaacaggaggaatc
aacaagtggctgcacttcctcccgatctccttgcataagttagtggaccaagtactcagacaga
tgttttct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCGTGCTATAAGGCCAACAGGAGGAATCAACAAGTGGCTGCACTTCCTCCCGATCTCCTTGCAT
AAGTTAGTGGACCAAGTACTCAGACAGATGTTTTCTAGTAACAATTTGCAACACTATTTCAAGG
GGCAAAAATGGCTCAATATACTGTCTGTAATGGCCAGTCCCTTGGATTATCTTCTGTCCTAGAA
GCAGATACCAAAAGGATAGTTACCATGGTCAATGATACCTTTGAGAAGTAAGATCCCATCGCTT
ATATTGGTGCTGTGCTGTTTGTGCACTATTTCATATTAAGCTTGAAGTCCATTCCACGACTTCT
GTGATGATGATCTCTTTTATATAGCTTGCCCATAGTTTAGTCGCCATAATCCCTGTTATATGCT
TGGTAGCTTGGCAGCTCTGGAATAAAACAGAACTGAACATTTTCATTCTGAGCACATGTTGCCC
CTGAAAGATTTTAAGAATATGTTCTGTTGATATCATTACCATGGACTCTAGATGTGGTATCCTT
GAATGTTGATGACATAATTCTAGTAAGAACATGGGAAATAAGTGTTTTTCTTGGATGTGAAATA
GCATCTTCTTAGAACATAGCTCTGGACTTCTATCCAATGAATATTGCTATGCAATTGTAGAGCA
GCCTAAACATTGTCTATGATTTCTAAGTTATCGAAATTTCTTGACATACTATTTACCCTGCACT
GCTTCCTCAAATTTTGTGTTTCTTCAGAGAAGGCCTGGCACTGGTTGTCGCTTGTGGACGAGAT
ACCATATCATATGCAAGTTCAATAAGGTGTTTGGCTCCAGATAATGTCTTTGTCATACAGGTAG
AATTCTGTAAGGAATGCATTACTTACTTGTTTGGTTACTTGTTATTCAACTTGGGTTATGAATC
ATTATCCACTTTGTCATATGGATATTAGCTTTACATCGTATTTGTTGCATTTCAGATACAACAT
CCCAGGTATCGCCTTGATAGGTTTGATTTGGTGGTAACTCCTCGTCATGATTACTATGCTTTGA
CTACAAGAGGACAACGGGAATTCCCTCACCTTCTCTGGAGATGGATTACTGCACGAGAACCACC
TGGGCCAAATGTGATATGTGTTTTCTTTTCTGCAAGCAACAATCTCTTGTATGTGTTCATAGCG
TAGCAACTGTCTCAATTCTGAACCCTGAAAATTGGAAAGCCAGGTCCTTACTGTTGGCGCACTT
CACCAAGCAGATTCTGCTGCATTACGCACTGCTGCTTCTGATTGGCATGATGAACTTGCTAACT
CACCAAAGCCATTGGTTGTAGTGAACATTGGAGGACCAACAAGTAAATCCATCCCTCTCTCCCT
CCCTTCCTGTCTGCTTGCCTGCAGCCTACCTATGTGATATGAGCTTCCTGATATATGCAATTTT
ACATAAGTTAGTTCTTACTGTTCATTGGACATGAGAACAATGGCAGCGTCAAATGGATCTGCTT
GTGTCTGTTAGTTGTAACAAGGAATTTTGATATCTCTTTCTCTACTGACTTGTAGCATTGCTAA
TGCAAAAGGTGTCAAATACAAACATTTACATGAACATGTCAAGCTAAAAAATGTTTATTTTCTT
TTAGTTTGTGTTATGGAGCTAAAGCTTCCAAACTAAAATGGAGAAGCTGCAGTTTTCTCACAAA
CCTTTCTTCTAATCCCTCTTTCAAAATTTTGAACGTAGCATGAGATATTGCTGTTATATACATA
TTTAGCTTGCATATATTGATTGAATGCTTGGGAGCAGAAGAAAGAAATCAGTCTCACACCTTCT
GTGTTCTCATCCATGCAAACCCTTGCATTTCATATGCTTTTTTGTTTATTCAAGTTTTTTTTGT
CTTGTTCAAGTTTTTTTTGTCTTGTTCAGAATTTTCAACTTGATGTTCAGAAAAAAAGGTTATT
CCTTCACATATTTTAGTTTTTTGAGACTTTTTTTAAACTTTGAACTCATATGCTGAGCCTTTTC
TGCTTTCATGGTTATATAGATTTAACACATGTGATATTTTCAATGGCCAGGAAACTGTAATTAC
GATGTAGGCCTTGCCAAGAAGTTGATAAGCTCACTACACAATGTTCTGAAGACCTGTGGAAGTG
TCAGGGTTTCATTTTCCAGAAGAACACCACATAAGGTAGGACCTTGAATTGTCCATTTTTTCTT
AGTAGGTGCCAGTACTTAAATTTCTAAATCATTTGTTGGCAGGTGTCTGATCTTATATTGAAAG
AGTTCAGTACACACCCTAAGGTTTATATTTGGAATGGTGAAGGTAGTAGTCAAAAGCCTAAAAT
GAGACATGTCTGATGTACTCATCTTTATGTGCTCTACGAAAGTTTTCTCAGCCAGTTTTCTTGA
TGCAGGACCCAACCCACACCTTGGGCATCTTGCATGGGCTGATGCTTTTGTCATAACAGCAGAC
TCAATTAGTATGCTAAGTGAGGCATGTAGCACTGGGTGAGCTTATATTATTCATCTGTATCTTT
TCACTATTTTTTTTATTTGTATAACTGACCTTCCTAACATTTCTATTTACAGGAAACCTGTTTA
TGTTGTTGGAACTGAGCACTGCAGGTGGAAATTCTTGGATTTTCACAACAGGCTGCATGAAAGA
GGTGCTGTCCGCCCTTTCACTGGACTGGAAGATGTAAGTTCGCTAAATATTCACGTATAGTGGA
TCAATTGAGGTTTTATACAGTCCTGGTTATTTCAATTGCCCCCTCCCACACGTGCTTCATTTTC
CCGAGTAGGCGATGTTGAGTCTTTTCTGATGCAATCGTTTCTGTTATCCATCTGTTTCTTTTTT
CACCGGAATGACTGAAGGAGGTCATTCAATGTAATTAAGATAATTATCCATCTGTTTCACCGTG
ATGAAAGTTTTGAAAATACTCAATATGAAGATATAATTATCTTAGGGACGAATTATCACCCTTC
TTTTTTCTCCATAGATGTCAGACAACTGGAGCTACCCTCCCCTGAACGATGCCATTGATGTGGC
GGCACGGGTTCGTGAAGTGCTTGCAGAGCGTGGATGGACAGTGGGGTAATGGCAACCAACGTAG
AGAAAGAAGAATGCCATTTCG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR2919
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021