Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os01g0541900_circ_g.1 |
ID in PlantcircBase | osa_circ_002081 |
Alias | Os_ciR5816 |
Organism | Oryza sativa |
Position | chr1: 19964197-19967912 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | Os01g0541900 |
Parent gene annotation |
Protein kinase, core domain containing protein. (Os01t0541900-01 ) |
Parent gene strand | - |
Alternative splicing | Os01g0541900_circ_g.2 Os01g0541900_circ_g.3 |
Support reads | 2 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os01t0541900-01:8 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.239218524 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
19967580-19964231(+) 19964212-19967752(-) 19967714-19967894(-) |
Potential amino acid sequence |
MSFLKISGAMYINVPTMFFLWKPPVGLPDDLQFSTETCLMSFWYMAKPKSAKCGWKSLSIKMFA GFISLCTMPRMFRYWRAFAGTHHQVIKWFL*(+) MMSSCKGSPIPKHPWHSTQRYKACKHFDR*(-) MYQKDIKHVSVENWRSSGKPTGGFHKKNMVGTLIYMAPEILRKDIHTEKSDVYSFAISINELLT GVVPYTDLRAEAQAHTVLEMTYTEQQLTAAIVSQGLRPALALPESGAPPSLLSLIQRCWDSDPQ QRPSFKDITEELKIIEKHIAVNSCSLASPANKSQNGNTEVHHYQEALSWLNQGELFAKGNKLDS TVDHWSDIFDQSSKYCPTLSWGSFATCGRRETMEDTHFMLPHMSEEKDLHAFGIFDGHRGSAAA EFSVRAVPGFLKQFNSNTSPTDALTEAFVRTDIAFREELILHQKSKRITQKNWHPGCTAVTALI VRNKLFVANAGDCRAILNRAGEPFPMTRDHVASCPKERERIVKEGTEVKWQIDTWRVGAAALQV TRSIGDDDLKPAVTAQPEVIETILSPDDEFLQRLSNT*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015 |