Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os01g0541900_circ_g.3 |
ID in PlantcircBase | osa_circ_002083 |
Alias | NA |
Organism | Oryza sativa |
Position | chr1: 19964918-19966071 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os01g0541900 |
Parent gene annotation |
Protein kinase, core domain containing protein. (Os01t0541900-01 ) |
Parent gene strand | - |
Alternative splicing | Os01g0541900_circ_g.1 Os01g0541900_circ_g.2 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os01t0541900-01:4 |
Conservation Information | |
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Conserved circRNAs | zma_circ_009608 |
PMCS | 0.193897545 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
19966055-19964920(-) |
Potential amino acid sequence |
MTYTEQQLTAAIVSQGLRPALALPESGAPPSLLSLIQRCWDSDPQQRPSFKDITEELKIIEKHI AVNSCSLASPANKSQNGNTEVHHYQEALSWLNQGELFAKGNKLDSTVDHWSDIFDQSSKYCPTL SWGSFATCGRRETMEDTHFMLPHMSEEKDLHAFGIFDGHRGSAAAEFSVRAVPGFLKQFNSNTS PTDALTEAFVRTDIAFREELILHQKSKRITQKNWHPGCTAVTALIVRNKLFVANAGDCRAILNR AGEPFPMTRDHVASCPKERERIVKEGTEVKWQIDTWRVGAAALQAHTVLEMTYTEQQLTAAIVS QGLRPALALPESGAPPSLLSLIQRCWDSDPQQRPSFKDITEELKIIEKHIAVNSCSLASPANKS QNGNTEVHHYQEALSWLNQGELFAKGNKLDSTVDHWSDIFDQSSKYCPTLSWGSFATCGRRETM EDTHFMLPHMSEEKDLHAFGIFDGHRGSAAAEFSVRAVPGFLKQFNSNTSPTDALTEAFVRTDI AFREELILHQKSKRITQKNWHPGCTAVTALIVRNKLFVANAGDCRAILNRAGEPFPMTRDHVAS CPKERERIVKEGTEVKWQIDTWRVGAAALQAHTVLEMTYTEQQLTAAIVSQGLRPALALPESGA PPSLLSLIQRCWDSDPQQRPSFKDITEELKIIEKHIAVNSCSLASPANKSQNGNTEVHHYQEAL SWLNQGELFAKGNKLDSTVDHWSDIFDQSSKYCPTLSWGSFATCGRRETMEDTHFMLPHMSEEK DLHAFGIFDGHRGSAAAEFSVRAVPGFLKQFNSNTSPTDALTEAFVRTDIAFREELILHQKSKR ITQKNWHPGCTAVTALIVRNKLFVANAGDCRAILNRAGEPFPMTRDHVASCPKERERIVKEGTE VKWQIDTWRVGAAALQAHTVLEMTYTEQQLTAAIVSQGLRPALALPESGAPPSLLSLIQRCWDS DPQQRPSFKDITEELKIIEKHIAVNSCSLASPANKSQNGNTEVHHYQEALSWLNQGELFAKGNK LDSTVDHWSDIFDQSSKYCPTLSWGSFATCGRRETMEDTHFMLPHMSEEKDLHAFGIFDGHRGS AAAEFSVRAVPGFLKQFNSNTSPTDALTEAFVRTDIAFREELILHQKSKRITQKNWHPGCTAVT ALIVRNKLFVANAGDCRAILNRAGEPFPMTRDHVASCPKERERIVKEGTEVKWQIDTWRVGAAA LQ(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |