Detail information of Os07g0486500_circ_g.4


General Information
CircRNA Name Os07g0486500_circ_g.4
ID in PlantcircBase osa_circ_033844
Alias NA
Organism Oryza sativa
Position chr7: 17910126-17910714  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os07g0486500
Parent gene annotation RhoGAP domain containing protein. (Os07t0486500-01);RhoGAP domai
n containing protein. (Os07t0486500-02)
Parent gene strand +
Alternative splicing Os07g0486500_circ_g.2 Os07g0486500_circ_g.3 Os07g0486500_circ_g.5 Os07g0486500_circ_g.6 Os07g0486500_circ_g.7
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os07t0486500-01:3
Os07t0486500-02:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGAAATATACTGAAGAAGCTTCCCAATGTGAACTACATGACACTAGAGTTTGTTACAGCACTG
CTACTTAGAGTAAGCCGTAAATCATCGCTTAACAAGtctttggtgttcccattgaagccaccgt
acaacgagagcaatctggtaaagctgtgcctctggtacttgtgagatgtgcagattatctggtt
atatcagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TCTTTGGTGTTCCCATTGAAGCCACCGTACAACGAGAGCAATCTGGTAAAGCTGTGCCTCTGGT
ACTTGTGAGATGTGCAGATTATCTGGTTATATCAGGTAAAATGCTGAAATTCAATAGAAGGTGG
TTTTATTACTACATTTTTTTCATACCTGACATTTAATTTGCTTTTATTAGGTTTGAGTAATGAG
TACTTGTTCAAATCAGAGGGTGAAAAAAAAGTTCTTCAGCAATTAGTCTCTCTTTACAATGAAG
GTACCATTTTCATTCATTATGTTTGAACTTAGATTTTGTGATCATGATTCATTGTTGTGATCTT
TGTAAGTTTATTGTTGTTTTGCAGATTCAGGTGCACCTTTCCCTGATGGTGTAAACCCCATTGA
TGTGGCTGCACTGATAAAGTGCTATCTTGCTAGCATCCCTGAGCCACTTACTACATTCTCTCTT
TATGATGAACTTAGAGATGCAAGGGTTAGCATTGCAGATTTAAGAAATATACTGAAGAAGCTTC
CCAATGTGAACTACATGACACTAGAGTTTGTTACAGCACTGCTACTTAGAGTAAGCCGTAAATC
ATCGCTTAACAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.319582074
Functional Information
Coding potential Y
Potential coding position 17910653-17910194(+)
Potential amino acid sequence MTLEFVTALLLRVSRKSSLNKSLVFPLKPPYNESNLVKLCLWYL*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017