Detail information of Os07g0486500_circ_g.3


General Information
CircRNA Name Os07g0486500_circ_g.3
ID in PlantcircBase osa_circ_033843
Alias NA
Organism Oryza sativa
Position chr7: 17908941-17910714  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os07g0486500
Parent gene annotation RhoGAP domain containing protein. (Os07t0486500-01);RhoGAP domai
n containing protein. (Os07t0486500-02)
Parent gene strand +
Alternative splicing Os07g0486500_circ_g.2 Os07g0486500_circ_g.4 Os07g0486500_circ_g.5 Os07g0486500_circ_g.6 Os07g0486500_circ_g.7
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os07t0486500-01:6
Os07t0486500-02:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGAAATATACTGAAGAAGCTTCCCAATGTGAACTACATGACACTAGAGTTTGTTACAGCACTG
CTACTTAGAGTAAGCCGTAAATCATCGCTTAACAAGgcttcaagctgaagcaggcagggcaatc
agcaggggacaatatagctgatgttgctggcaaggttggttcagtggttaagagtcggtgggct
gtcttcca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 749
Transcript exons: 17908941-17909185,17909706-17909768,17909855-17909873,17
910126-17910224,17910304-17910381,17910470-17910714
GCTTCAAGCTGAAGCAGGCAGGGCAATCAGCAGGGGACAATATAGCTGATGTTGCTGGCAAGGT
TGGTTCAGTGGTTAAGAGTCGGTGGGCTGTCTTCCAGGAGGCTAGGCAGAGGCAGCCGCCACCA
GGGGAGACTGTGCAAGAGCGTTTCATCTCTGCTGCTGCCACCACTGGGGTGCTTCTGAGGAAGG
GCATTTCAGAGACAAAGGAGAAAGTTGCAGTGGGAAAGGTCAAAGTTGAAGAGGCTGCTAAAAA
AACTGCTGACAAAAGCAAGACTATTTTGAACAACATTGAACGCTGGCAGAAGGGAGTCGCCAGC
ACTGATGTCTTTGGTGTTCCCATTGAAGCCACCGTACAACGAGAGCAATCTGGTAAAGCTGTGC
CTCTGGTACTTGTGAGATGTGCAGATTATCTGGTTATATCAGGTTTGAGTAATGAGTACTTGTT
CAAATCAGAGGGTGAAAAAAAAGTTCTTCAGCAATTAGTCTCTCTTTACAATGAAGATTCAGGT
GCACCTTTCCCTGATGGTGTAAACCCCATTGATGTGGCTGCACTGATAAAGTGCTATCTTGCTA
GCATCCCTGAGCCACTTACTACATTCTCTCTTTATGATGAACTTAGAGATGCAAGGGTTAGCAT
TGCAGATTTAAGAAATATACTGAAGAAGCTTCCCAATGTGAACTACATGACACTAGAGTTTGTT
ACAGCACTGCTACTTAGAGTAAGCCGTAAATCATCGCTTAACAAG

Genomic sequence GCTTCAAGCTGAAGCAGGCAGGGCAATCAGCAGGGGACAATATAGCTGATGTTGCTGGCAAGGT
TGGTTCAGTGGTTAAGAGTCGGTGGGCTGTCTTCCAGGAGGCTAGGCAGAGGCAGCCGCCACCA
GGGGAGACTGTGCAAGAGCGTTTCATCTCTGCTGCTGCCACCACTGGGGTGCTTCTGAGGAAGG
GCATTTCAGAGACAAAGGAGAAAGTTGCAGTGGGAAAGGTCAAAGTTGAAGAGGTGCGAGATTT
TTGATAAAATCTACTTCGAGTTGCTTTTACTCAGTTGTTATCTTGTAAATTTGAAGTTTCTGCT
TGTATAACATATTATTTGAATCAAGATTCAAGTTCTTGAAACAATGATTAGTACCCTTATCAGT
TGATCTGTAGCACATTCTGATTTTCCACACGAATCATGTGAACAGAAAGAATGCCCCAGAGGTA
GACTGAACTGTCATCAGCCAAATATAGCAGAATAACAAATACCTTCTGTTTTGACTTTTGAAGA
AAAAGAAAGAAGTAGTGCACTTTAGTTGTTGGCATTTGAGAACGTGGTTAGGAATTTCTTGTTG
GTGGACATATCTTCTAATCCATGGTAATCTTCAAAACACATGTACCTAAATTGAGAACATGCCA
TTTGATATTTGATTGGAGATTGCGGCTTGATCTTTGCATTGTGGTTATAGTTTTGGTTCCTTGT
GTTAAAATAGCAATGTTGCTTAGTGAGATTGAATTTTGTGGTTTGTTTGTCTTTGTTGCAGGCT
GCTAAAAAAACTGCTGACAAAAGCAAGACTATTTTGAACAACATTGAACGCTGGCAGAAGGTTT
GTGATTCACTTTGTTCTTGGTACTACTCTCCCTTATCTGGAGTACGATGCTGAACTTAGTTTCT
TCTGATTCCTTGTTTCAGGGAGTCGCCAGCACTGATGGTGAGTCTGCCCAGAATGCATATATAT
CATTTTCATTAAGGCAGCTAAAGTTTATTGCATTATAATTGCAATTCTACAACCTTAAGCATCT
AGCAGTTAGCTGGAGTACTTGATTAACGTGCTACTCTTTGCTCAGTTTAGTTCAACATTTCCGT
GGTATTTACTGCATGTTTTGTTTTCCTGTCTACTGATGAGTACTCATGGAAATTTAGACTATTT
GATGGCCAATAACTTTGCCTTGTGATGTTGCAGTCTTTGGTGTTCCCATTGAAGCCACCGTACA
ACGAGAGCAATCTGGTAAAGCTGTGCCTCTGGTACTTGTGAGATGTGCAGATTATCTGGTTATA
TCAGGTAAAATGCTGAAATTCAATAGAAGGTGGTTTTATTACTACATTTTTTTCATACCTGACA
TTTAATTTGCTTTTATTAGGTTTGAGTAATGAGTACTTGTTCAAATCAGAGGGTGAAAAAAAAG
TTCTTCAGCAATTAGTCTCTCTTTACAATGAAGGTACCATTTTCATTCATTATGTTTGAACTTA
GATTTTGTGATCATGATTCATTGTTGTGATCTTTGTAAGTTTATTGTTGTTTTGCAGATTCAGG
TGCACCTTTCCCTGATGGTGTAAACCCCATTGATGTGGCTGCACTGATAAAGTGCTATCTTGCT
AGCATCCCTGAGCCACTTACTACATTCTCTCTTTATGATGAACTTAGAGATGCAAGGGTTAGCA
TTGCAGATTTAAGAAATATACTGAAGAAGCTTCCCAATGTGAACTACATGACACTAGAGTTTGT
TACAGCACTGCTACTTAGAGTAAGCCGTAAATCATCGCTTAACAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.243229791
Functional Information
Coding potential Y
Potential coding position 17910653-17908949(+)
17910143-17910709(-)
Potential amino acid sequence MTLEFVTALLLRVSRKSSLNKASS*(+)
MGTPKTSVLATPFCQRSMLFKIVLLLSAVFLAASSTLTFPTATFSFVSEMPFLRSTPVVAAAEM
KRSCTVSPGGGCLCLASWKTAHRLLTTEPTLPATSAILSPADCPACFSLKPC*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017