Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d041632_circ_g.2 |
ID in PlantcircBase | zma_circ_007641 |
Alias | zma_circ_0001160, GRMZM2G097068_C2 |
Organism | Zea mays |
Position | chr3: 130500559-130502718 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | find_circ, CIRI2 |
Parent gene | Zm00001d041632 |
Parent gene annotation |
Trafficking protein particle complex II-specific subunit 130 hom olog |
Parent gene strand | + |
Alternative splicing | Zm00001d041632_circ_g.1 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d041632_T007:5 Zm00001d041632_T003:5 Zm00001d041632_T004:5 Zm00001d041632_T005:5 Zm00001d041632_T002:5 Zm00001d041632_T009:6 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.072867508 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
130500569-130502715(+) 130502697-130500688(+) 130500671-130502715(-) |
Potential amino acid sequence |
MELTKGAADNYHRSWWKRHGVVLDGEIAALFFKHGNYDLAVKSYEKVCALYSAEGWEELLADVL PDLAECQKILNDEAGYLASCVKLLSLDSGLFSSKERQGFQSEVVRLAHSEMKHLVPLDVSSLIT FAGNAGPPLELCDGDPGTLSVAVWNGFPDDITLESLSLRLSASSSADEGIKAIKSSDSHVLVPG RNIISFDIPRQKPGSYVLGALTGQIGKLSFRSHGFSQDGPVETDEFMSFEKPTRPVLKVRKPRA LVDITPAVSSALLMNELQWIGLIVKPIDYSLKGGILHIDAGAELKIEESQMIEIEIYVSDMECA NSANSSIKAGKVEKVPIENGKIELPDWASDVTTLVWFPVRAIDDTIARGESLVSQKQSVVDGMR MIALKLEFGVFRNQVFERTIAVHFTNPFHVSTRVVDKCNDGALLLQKRYMELTKGAADNYHRSW WKRHGVVLDGEIAALFFKHGNYDLAVKSYEKVCALYSAEGWEELLADVLPDLAECQKILNDEAG YLASCVKLLSLDSGLFSSKERQGFQSEVVRLAHSEMKHLVPLDVSSLITFAGNAGPPLELCDGD PGTLSVAVWNGFPDDITLESLSLRLSASSSADEGIKAIKSSDSHVLVPGRNIISFDIPRQKPGS YVLGALTGQIGKLSFRSHGFSQDGPVETDEFMSFEKPTRPVLKVRKPRALVDITPAVSSALLMN ELQWIGLIVKPIDYSLKGGILHIDAGAELKIEESQMIEIEIYVSDMECANSANSSIKAGKVEKV PIENGKIELPDWASDVTTLVWFPVRAIDDTIARGESLVSQKQSVVDGMRMIALKLEFGVFRNQV FERTIAVHFTNPFHVSTRVVDKCNDGALLLQKRYMELTKGAADNYHRSWWKRHGVVLDGEIAAL FFKHGNYDLAVKSYEKVCALYSAEGWEELLADVLPDLAECQKILNDEAGYLASCVKLLSLDSGL FSSKERQGFQSEVVRLAHSEMKHLVPLDVSSLITFAGNAGPPLELCDGDPGTLSVAVWNGFPDD ITLESLSLRLSASSSADEGIKAIKSSDSHVLVPGRNIISFDIPRQKPGSYVLGALTGQIGKLSF RSHGFSQDGPVETDEFMSFEKPTRPVLKVRKPRALVDITPAVSSALLMNELQWIGLIVKPIDYS LKGGILHIDAGAELKIEESQMIEIEIYVSDMECANSANSSIKAGKVEKVPIENGKIELPDWASD VTTLVWFPVRAIDDTIARGESLVSQKQSVVDGMRMIALKLEFGVFRNQVFERTIAVHFTNPFHV STRVVDKCNDGALLLQKRYMELTKGAADNYHRSWWKRHGVVLDGEIAALFFKHGNYDLAVKSYE KVCALYSAEGWEELLADVLPDLAECQKILNDEAGYLASCVKLLSLDSGLFSSKERQGFQSEVVR LAHSEMKHLVPLDVSSLITFAGNAGPPLELCDGDPGTLSVAVWNGFPDDITLESLSLRLSASSS ADEGIKAIKSSDSHVLVPGRNIISFDIPRQKPGSYVLGALTGQIGKLSFRSHGFSQDGPVETDE FMSFEKPTRPVLKVRKPRALVDITPAVSSALLMNELQWIGLIVKPIDYSLKGGILHIDAGAELK IEESQMIEIEIYVSDMECANSANSSIKAGKVEKVPIENGKIELPDWASDVTTLVWFPVRAIDDT IARGESLVSQKQSVVDGMRMIALKLEFGVFRNQVFERTIAVHFTNPFHVSTRVVDKCNDGALLL Q(+) MMELYFYRKDIWSLLKVQLTITTDLGGKDMELFLMERSQLCSLSMEIMTWL*(+) MLKEQSCDLSIKNNSMSFPPRSVVIVSCTFSKLHISFL*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Ma et al., 2021b;Zhang et al., 2019 |