Detail information of Zm00001d041632_circ_g.2


General Information
CircRNA Name Zm00001d041632_circ_g.2
ID in PlantcircBase zma_circ_007641
Alias zma_circ_0001160, GRMZM2G097068_C2
Organism Zea mays
Position chr3: 130500559-130502718  JBrowse»
Reference genome AGPv4.38
Type   e-circRNA
Identification method find_circ, CIRI2
Parent gene Zm00001d041632
Parent gene annotation Trafficking protein particle complex II-specific subunit 130 hom
olog
Parent gene strand +
Alternative splicing Zm00001d041632_circ_g.1
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d041632_T007:5
Zm00001d041632_T003:5
Zm00001d041632_T004:5
Zm00001d041632_T005:5
Zm00001d041632_T002:5
Zm00001d041632_T009:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATTATGATTTTCAGGACCATTGCAGTTCATTTTACTAACCCATTCCATGTAAGCACACGCGTC
GTGGACAAGTGCAATGATGGAGCTCTACTTCTACAGaaaagatatatggagcttactaaaggtg
cagctgacaattaccaccgatcttggtggaaaagacatggagttgttcttgatggagagatcgc
agctctgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AAAAGATATATGGAGCTTACTAAAGGTGCAGCTGACAATTACCACCGATCTTGGTGGAAAAGAC
ATGGAGTTGTTCTTGATGGAGAGATCGCAGCTCTGTTCTTTAAGCATGGAAATTATGACCTGGC
TGTGAAATCCTATGAGAAAGTTTGTGCTCTCTATTCTGCAGAAGGCTGGGAAGAGCTGTTGGCA
GATGTTCTTCCTGATCTTGCAGAATGCCAGAAGATTCTTAATGATGAAGCTGGTTATTTGGCTT
CTTGTGTAAAGTTACTATCGCTGGACAGTGGCTTGTTTTCATCTAAAGAGCGGCAAGGTTTCCA
GTCAGAAGTTGTTCGACTTGCTCACAGTGAAATGAAACATCTTGTGCCCCTAGATGTCTCGTCA
CTAATTACATTTGCTGGAAATGCTGGTCCACCACTAGAATTATGTGATGGAGATCCTGGTACAC
TATCTGTAGCAGTTTGGAATGGCTTCCCAGATGACATCACACTGGAGTCTCTCAGTTTAAGGTT
GTCAGCTTCTTCTAGTGCAGATGAAGGTATCAAGGTACAAGTACTGTGTTAGCATTACTGATTG
CTACCCTTTTCCTCTGTGGCATGTCTTATTCTGTTATTCATGGTTTGGATGCACTAATATGTTT
TCAAGTAAAATTCAGTTCCATCCTTGCAGAACAGATTTCATAAATCAAAACTACTATGATAAAG
TATATCAAACTCTAGAGAAATGACCGCACATAACATATTCTTCAGTCACCTAATGGTTTAATGT
TGTCATCCATGCAGGCAATTAAAAGTTCAGATTCTCATGTTCTAGTACCAGGTAGAAATATCAT
CTCTTTTGACATTCCTCGTCAAAAGCCTGGCTCCTATGTGTTGGGTGCTCTCACTGGACAGATT
GGCAAGCTGTCATTCAGATCACATGGATTTTCCCAAGATGGTCCAGTTGAAACTGATGAATTTA
TGAGCTTTGAGAAACCGACAAGACCTGTTTTGAAGGTAATTGCTAAAATGAGCTGAAGATTACT
TAGAAGTTTTTCGTGGGGCATGACTGGAGCTAGATCCCTTAGAAGTTTCTGGCCTTAAGTTTTT
TGGGGTTTCCCCTTAAGATTTTTTTTTTCTTTTTCCCCATTTTTCCATAACTGGCACCTTGTAT
TGGGTCTATTTTAGGCCTTTCTTTCTCTTCTTAATATATTGATGTACAGTTCTCCTACAGTTCG
AGAAAAAAAGAGCTGACGATCTGAACTGTTTTATAAAATCGTAGCCCTACCCCATGTCACTAAA
CTGCCATAAGAGATACTATCCATACTTTCAAAACAAAACCGGAGCATAGTTTCCTCTAATTAGT
GAACATGGTCAGTTATATTGTTTAAGACAGATATGTTCTCATTGCATTTGTTTCTCTGTTGTAG
GTGAGAAAACCAAGGGCTTTAGTTGATATTACACCTGCTGTGTCCTCTGCTTTGCTTATGAATG
AGCTCCAATGGATTGGATTAATCGTTAAGCCTATAGACTATTCTTTAAAAGGTGGAATATTGCA
TATCGATGCTGGCGCTGAACTGAAAATTGAGGAGTCTCAGATGATTGAAATAGAAATTTACGTA
AGTGATATGGAGTGTGCTAATTCTGCCAACAGCTCCATCAAAGCTGGAAAGGTTGAAAAGGTAC
CTATTGAAAATGGAAAGATAGAACTTCCTGATTGGGCTAGTGATGTGACTACTCTTGTTTGGTT
TCCTGTTCGTGCTATTGATGACACAATTGCAAGAGGAGAATCCCTAGGTCTGTATGTAACAAGT
GATAAATTCACTATGTTATGTTTCAATCAGTTAGTTGACCTTTCTTTGTCCTTGTTTCAGTGTC
TCAGAAACAGAGCGTTGTAGATGGGATGAGAATGATTGCTCTCAAGCTTGAGTTTGGAGTTTTC
CGTAACCAAGTGTTTGAAAGGTATCTCTCTGTTTTTCCCCTCAAACATGCAGAAGAGCTGTGTC
ATGTCTGCCATTGTATAAGAAAAGATGAGATACTTCGATACATTGAACTTTAGATATAGATACT
CAACAAATTTATTATTATGATTTTCAGGACCATTGCAGTTCATTTTACTAACCCATTCCATGTA
AGCACACGCGTCGTGGACAAGTGCAATGATGGAGCTCTACTTCTACAG
Conservation Information
Conserved circRNAs NA
PMCS 0.072867508
Functional Information
Coding potential Y
Potential coding position 130500569-130502715(+)
130502697-130500688(+)
130500671-130502715(-)
Potential amino acid sequence MELTKGAADNYHRSWWKRHGVVLDGEIAALFFKHGNYDLAVKSYEKVCALYSAEGWEELLADVL
PDLAECQKILNDEAGYLASCVKLLSLDSGLFSSKERQGFQSEVVRLAHSEMKHLVPLDVSSLIT
FAGNAGPPLELCDGDPGTLSVAVWNGFPDDITLESLSLRLSASSSADEGIKAIKSSDSHVLVPG
RNIISFDIPRQKPGSYVLGALTGQIGKLSFRSHGFSQDGPVETDEFMSFEKPTRPVLKVRKPRA
LVDITPAVSSALLMNELQWIGLIVKPIDYSLKGGILHIDAGAELKIEESQMIEIEIYVSDMECA
NSANSSIKAGKVEKVPIENGKIELPDWASDVTTLVWFPVRAIDDTIARGESLVSQKQSVVDGMR
MIALKLEFGVFRNQVFERTIAVHFTNPFHVSTRVVDKCNDGALLLQKRYMELTKGAADNYHRSW
WKRHGVVLDGEIAALFFKHGNYDLAVKSYEKVCALYSAEGWEELLADVLPDLAECQKILNDEAG
YLASCVKLLSLDSGLFSSKERQGFQSEVVRLAHSEMKHLVPLDVSSLITFAGNAGPPLELCDGD
PGTLSVAVWNGFPDDITLESLSLRLSASSSADEGIKAIKSSDSHVLVPGRNIISFDIPRQKPGS
YVLGALTGQIGKLSFRSHGFSQDGPVETDEFMSFEKPTRPVLKVRKPRALVDITPAVSSALLMN
ELQWIGLIVKPIDYSLKGGILHIDAGAELKIEESQMIEIEIYVSDMECANSANSSIKAGKVEKV
PIENGKIELPDWASDVTTLVWFPVRAIDDTIARGESLVSQKQSVVDGMRMIALKLEFGVFRNQV
FERTIAVHFTNPFHVSTRVVDKCNDGALLLQKRYMELTKGAADNYHRSWWKRHGVVLDGEIAAL
FFKHGNYDLAVKSYEKVCALYSAEGWEELLADVLPDLAECQKILNDEAGYLASCVKLLSLDSGL
FSSKERQGFQSEVVRLAHSEMKHLVPLDVSSLITFAGNAGPPLELCDGDPGTLSVAVWNGFPDD
ITLESLSLRLSASSSADEGIKAIKSSDSHVLVPGRNIISFDIPRQKPGSYVLGALTGQIGKLSF
RSHGFSQDGPVETDEFMSFEKPTRPVLKVRKPRALVDITPAVSSALLMNELQWIGLIVKPIDYS
LKGGILHIDAGAELKIEESQMIEIEIYVSDMECANSANSSIKAGKVEKVPIENGKIELPDWASD
VTTLVWFPVRAIDDTIARGESLVSQKQSVVDGMRMIALKLEFGVFRNQVFERTIAVHFTNPFHV
STRVVDKCNDGALLLQKRYMELTKGAADNYHRSWWKRHGVVLDGEIAALFFKHGNYDLAVKSYE
KVCALYSAEGWEELLADVLPDLAECQKILNDEAGYLASCVKLLSLDSGLFSSKERQGFQSEVVR
LAHSEMKHLVPLDVSSLITFAGNAGPPLELCDGDPGTLSVAVWNGFPDDITLESLSLRLSASSS
ADEGIKAIKSSDSHVLVPGRNIISFDIPRQKPGSYVLGALTGQIGKLSFRSHGFSQDGPVETDE
FMSFEKPTRPVLKVRKPRALVDITPAVSSALLMNELQWIGLIVKPIDYSLKGGILHIDAGAELK
IEESQMIEIEIYVSDMECANSANSSIKAGKVEKVPIENGKIELPDWASDVTTLVWFPVRAIDDT
IARGESLVSQKQSVVDGMRMIALKLEFGVFRNQVFERTIAVHFTNPFHVSTRVVDKCNDGALLL
Q(+)
MMELYFYRKDIWSLLKVQLTITTDLGGKDMELFLMERSQLCSLSMEIMTWL*(+)
MLKEQSCDLSIKNNSMSFPPRSVVIVSCTFSKLHISFL*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to drought stress
Other Information
References Ma et al., 2021b;Zhang et al., 2019