Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d041632_circ_g.1 |
ID in PlantcircBase | zma_circ_001398 |
Alias | circ1727 |
Organism | Zea mays |
Position | chr3: 130500558-130502718 JBrowse» |
Reference genome | AGPv4.38 |
Type | ei-circRNA |
Identification method | CIRCexplor2 |
Parent gene | Zm00001d041632 |
Parent gene annotation |
Trafficking protein particle complex II-specific subunit 130 hom olog |
Parent gene strand | + |
Alternative splicing | Zm00001d041632_circ_g.2 |
Support reads | 4 |
Tissues | seedling leaves |
Exon boundary | No-Yes |
Splicing signals | GT-CA |
Number of exons covered | Zm00001d041632_T004:5 Zm00001d041632_T007:5 Zm00001d041632_T002:5 Zm00001d041632_T005:5 Zm00001d041632_T003:5 Zm00001d041632_T009:6 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.026124152 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chen et al., 2017b |