Detail information of Zm00001d041632_circ_g.1


General Information
CircRNA Name Zm00001d041632_circ_g.1
ID in PlantcircBase zma_circ_001398
Alias circ1727
Organism Zea mays
Position chr3: 130500558-130502718  JBrowse»
Reference genome AGPv4.38
Type   ei-circRNA
Identification method CIRCexplor2
Parent gene Zm00001d041632
Parent gene annotation Trafficking protein particle complex II-specific subunit 130 hom
olog
Parent gene strand +
Alternative splicing Zm00001d041632_circ_g.2
Support reads 4
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered Zm00001d041632_T004:5
Zm00001d041632_T007:5
Zm00001d041632_T002:5
Zm00001d041632_T005:5
Zm00001d041632_T003:5
Zm00001d041632_T009:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATTATGATTTTCAGGACCATTGCAGTTCATTTTACTAACCCATTCCATGTAAGCACACGCGTC
GTGGACAAGTGCAATGATGGAGCTCTACTTCTACAGgaaaagatatatggagcttactaaaggt
gcagctgacaattaccaccgatcttggtggaaaagacatggagttgttcttgatggagagatcg
cagctctg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAAAAGATATATGGAGCTTACTAAAGGTGCAGCTGACAATTACCACCGATCTTGGTGGAAAAGA
CATGGAGTTGTTCTTGATGGAGAGATCGCAGCTCTGTTCTTTAAGCATGGAAATTATGACCTGG
CTGTGAAATCCTATGAGAAAGTTTGTGCTCTCTATTCTGCAGAAGGCTGGGAAGAGCTGTTGGC
AGATGTTCTTCCTGATCTTGCAGAATGCCAGAAGATTCTTAATGATGAAGCTGGTTATTTGGCT
TCTTGTGTAAAGTTACTATCGCTGGACAGTGGCTTGTTTTCATCTAAAGAGCGGCAAGGTTTCC
AGTCAGAAGTTGTTCGACTTGCTCACAGTGAAATGAAACATCTTGTGCCCCTAGATGTCTCGTC
ACTAATTACATTTGCTGGAAATGCTGGTCCACCACTAGAATTATGTGATGGAGATCCTGGTACA
CTATCTGTAGCAGTTTGGAATGGCTTCCCAGATGACATCACACTGGAGTCTCTCAGTTTAAGGT
TGTCAGCTTCTTCTAGTGCAGATGAAGGTATCAAGGTACAAGTACTGTGTTAGCATTACTGATT
GCTACCCTTTTCCTCTGTGGCATGTCTTATTCTGTTATTCATGGTTTGGATGCACTAATATGTT
TTCAAGTAAAATTCAGTTCCATCCTTGCAGAACAGATTTCATAAATCAAAACTACTATGATAAA
GTATATCAAACTCTAGAGAAATGACCGCACATAACATATTCTTCAGTCACCTAATGGTTTAATG
TTGTCATCCATGCAGGCAATTAAAAGTTCAGATTCTCATGTTCTAGTACCAGGTAGAAATATCA
TCTCTTTTGACATTCCTCGTCAAAAGCCTGGCTCCTATGTGTTGGGTGCTCTCACTGGACAGAT
TGGCAAGCTGTCATTCAGATCACATGGATTTTCCCAAGATGGTCCAGTTGAAACTGATGAATTT
ATGAGCTTTGAGAAACCGACAAGACCTGTTTTGAAGGTAATTGCTAAAATGAGCTGAAGATTAC
TTAGAAGTTTTTCGTGGGGCATGACTGGAGCTAGATCCCTTAGAAGTTTCTGGCCTTAAGTTTT
TTGGGGTTTCCCCTTAAGATTTTTTTTTTCTTTTTCCCCATTTTTCCATAACTGGCACCTTGTA
TTGGGTCTATTTTAGGCCTTTCTTTCTCTTCTTAATATATTGATGTACAGTTCTCCTACAGTTC
GAGAAAAAAAGAGCTGACGATCTGAACTGTTTTATAAAATCGTAGCCCTACCCCATGTCACTAA
ACTGCCATAAGAGATACTATCCATACTTTCAAAACAAAACCGGAGCATAGTTTCCTCTAATTAG
TGAACATGGTCAGTTATATTGTTTAAGACAGATATGTTCTCATTGCATTTGTTTCTCTGTTGTA
GGTGAGAAAACCAAGGGCTTTAGTTGATATTACACCTGCTGTGTCCTCTGCTTTGCTTATGAAT
GAGCTCCAATGGATTGGATTAATCGTTAAGCCTATAGACTATTCTTTAAAAGGTGGAATATTGC
ATATCGATGCTGGCGCTGAACTGAAAATTGAGGAGTCTCAGATGATTGAAATAGAAATTTACGT
AAGTGATATGGAGTGTGCTAATTCTGCCAACAGCTCCATCAAAGCTGGAAAGGTTGAAAAGGTA
CCTATTGAAAATGGAAAGATAGAACTTCCTGATTGGGCTAGTGATGTGACTACTCTTGTTTGGT
TTCCTGTTCGTGCTATTGATGACACAATTGCAAGAGGAGAATCCCTAGGTCTGTATGTAACAAG
TGATAAATTCACTATGTTATGTTTCAATCAGTTAGTTGACCTTTCTTTGTCCTTGTTTCAGTGT
CTCAGAAACAGAGCGTTGTAGATGGGATGAGAATGATTGCTCTCAAGCTTGAGTTTGGAGTTTT
CCGTAACCAAGTGTTTGAAAGGTATCTCTCTGTTTTTCCCCTCAAACATGCAGAAGAGCTGTGT
CATGTCTGCCATTGTATAAGAAAAGATGAGATACTTCGATACATTGAACTTTAGATATAGATAC
TCAACAAATTTATTATTATGATTTTCAGGACCATTGCAGTTCATTTTACTAACCCATTCCATGT
AAGCACACGCGTCGTGGACAAGTGCAATGATGGAGCTCTACTTCTACAG
Conservation Information
Conserved circRNAs NA
PMCS 0.026124152
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b