Detail information of Zm00001d031778_circ_ag.2


General Information
CircRNA Name Zm00001d031778_circ_ag.2
ID in PlantcircBase zma_circ_003551
Alias control_test_circ_006105
Organism Zea mays
Position chr1: 201517026-201521637  JBrowse»
Reference genome AGPv4.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Zm00001d031778_circ_ag.1
Support reads NA
Tissues seedling
Exon boundary   NA-NA
Splicing signals   TG-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTCGACGGTGTGCTCGGTGGGCGAGTGCCAGTGCAGCTGCCTCAGGTAGTAGGCCGTGCCGTTG
ATCACCAGGCTCCCGGCGTCGCCCTCGAACCTCACCcatgatgtcgtggccgcggttgacgatg
gaggcctgggctgggcggtaggagtggttgaggaagccgagggcgggcaccagcgagacgcgct
cgcgggcg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATGATGTCGTGGCCGCGGTTGACGATGGAGGCCTGGGCTGGGCGGTAGGAGTGGTTGAGGAAG
CCGAGGGCGGGCACCAGCGAGACGCGCTCGCGGGCGAGGTCGATCGGGGACTGCATGCGCCCAG
CGCTGCAGTTGGCCCACTCCGGCTTGATGCTGCCCCAGTTCTCCGGCCCGTTCGCGTCGCCCGG
AATGTAGTTGAACTCCTCCTCGTCCTCCGTTTCCTCCTGGCCTCTGGCGGCCGGGATGGCGGCG
GAGAGCAAGAGGGCGGCGGAGATCAAGAGCGCGGTGAGGCCGCGGAGGTGGCGAGCTGGACCCA
TGCCCTCGCCCTTCTGTTGCCTGACGTCGTCTGTGCGCGGACGGCGCGCTTGTTGGTCGTTTTG
GCCGTTGAGCTGATTTGGGATTGGGAAGAAGAGCACCCCGCACCGAAAATATATAATAGAAGCC
GCTGTGGGGGTATGGAGGCTATAGATGTCCAATAAGCATGACCGGACCTGTTCTATCCCACTGT
ACTAAAAAACGTTACCTAAATTAACGTAAAGCCAGGATAGGTCATGATTCGTGGCTCCTCAGAT
CGTAAAGCTGAAATCGGAGGGGCTCAATTCATTGCCCTATTCTCGTCTTGTCCTCATCTTATCA
CCAGAGTGCTAGGTGGGTCTGATGGCGATGATGCACAACGTCTATGTTTAAAGCATGTATCAAA
ACTGGACTCTATATCCATGATAATTAACTTTACATAAGGTTTTCTTCGACAGTTCAGGCATCTG
TCTGTGGACTGACATTTGGATGGATGCCTCTCCTACAGTGTTTGTTTGCGTGGGGCATGTAGAA
AAGGTAGGAGTGCAACAGCAAAATGTTGCTCTCCTATACTATTGGTTCGTATGAGGCATTTGTT
GAAGACGTACATATTCCATCAAACTAATATACTAACAAAATGCACACTAATTAGTAAACTAACC
ACATAATAATCGAATTTACTAGCTTAATAATATAAAATTTGTGAAGGGCTTAATAATACTCACC
TTGTCGGGTGAAAGCACAAGGCTAGCGTTGAAGAGATGAGACGGACACGGAAGGGGTCGGGTCT
CGGGTGGAGAAAGGGGACTTTGTACGTAGGGACGACGTGGCGTGGCCGGGCAGGTGCACGGTGG
CTGCGACGTATGTAGTAGGCGTGGAGGCAGAGGCGACAATGAGAGAAAGGAGTGTGAGCCATTG
TAATTCATCTAATTTTCTTCATCGGTCGGCGGTGCTGTGGTCAATGAAAATTGCTCAGTTTTTA
TGAACTAAGCTAAAAACATAAAAAAAAAATATTGGTCGATATAAGTCTTATTTTATTTATATTG
TGAGCGATGGAACGTCCATTGTGAACATGTGTCCATTGTGAACATGTGCCCACCGTCGCTGATT
CTAAAGACAACCTGCAAGTTAATGTTATGATGCTCGGTTTTCACGTTAATGTTATGATGCTCGG
TTTTCACGGGTCGCGATCGGCCTGGAACTGATCGCAGCCGCCAGGCAGGGCAGTAGTGAACGTG
GAAGATGCATGCATGCAGTACAAAAGGACTGGAAGGTTTTGGCAGTTCGTGCCGTCTACGCAGC
AGCCACCATGATCGCAGACGCAGAGTACGAACGGAGAGCGATGCATGCTGGATGGCGGCCGTTA
TATACGACCATAGCTCGTTTCTGCCGCATCCGAGTACGGTACCACACGATAGGACATGTACAGT
ATAGGCTGACTTCATATGCCCTCCCTTAACGGCCCCGTACCGTAAATATACCGTGTACTTGGTA
CCATTCCAGTAGACAAGTCGTTAAAGCTTACTCCCTCTTCTCTTATGATGTACTATTAGTTGTT
GTTTAGGGCAATGACATGCTCTCCAAAATATAACTTTAACCAATGTTTTTTAATTAAAATACAG
TTAAACTCTTAATACATTTATATTTTTATAAAAGTACTTGTTAAGACAAATCGGTGTATATAAA
CATTATGTTTCAAAACTATATAATAAAATAGTTATTTATAGTCAAAATTTTATAAGTTTAACTC
AAACCTTTTTTAAAAAACGACAACTAATAGGACACCAGAGGGAGTATGCGGCTATAATAGGGTC
CTACTCGTACTTTCTTAAACGTGGCGTCTTCGCCTGCTCACTCCGGCCCCATGCATGGATCAGA
GCCAGGGAGGGAGGCTCGAGTCAAGAGACATACCTATCAAATCTGGAGGATGTGTCGACGTGCA
AGTTCCGACGTGTCGGGAGATTTGCTTTGCCTTAGGCTCTCTTCAGCAACTACAGTTCTAGTCA
TAAAGAGAAATCGAGTGCCTTAAGAATTCGAATTTCTTGCAAAACACCGTATTCCATTAAGAAC
TTGGGGTCATTCTCTTTATATCTAGGCCATGGCAAAAAATGGTATACCAATTGAGAGACGAATT
GATAGAAATAAAATCACGCCATGCATAACATGTAGATATATTGCCATAACAATTAAATTGAAGC
ATACACAATCTACAATAAGATGGATCTTTTCAGAAGAAGGGAAAAGCATTTTAAGACCATTCTA
TAAGAAACGTCATAACACGTAGATTTCAGTTGTTGGGCTGTATTTTAGTGATGAATAAATAGAA
CGTCATGTAATAACGTCATAAAGCCCAAATATGTAACATCATAAATCATCATGTAAAATCATTG
TGACAAATAAATTTGTCAGTACATTTAATTTACCTTCATGAACTGTGAAATCCTATGACAAAGG
TGTATTGCCATGAGGTTATTTATGCGGCTAAATAAATATGACAATGTAGAACTTGTATGATGAA
AATATAGTCTATCAATATATGTATTTCATCTTTTGTCTACATCCATCTCTCCCTGGAATGTGCT
ATTATTCATTCAGATAACACTACAACAGAACTGTTGTGAGCAAACTTCTTCAATAATTGAACAT
GATTTATATCGACACACTGTTCTGGGAGACATCTTTGTAGAAACTAAAACAAAATATTGACTGA
AAAATAACATGAACATGTCCTCCATGGCTGCTACACGAATGCACATCCACACAAATCAAGATAG
GAGAACATCAAAAACTCTTTTCGACATCCTTATTTATTGCTTCCTCTACTTTGGAAAAATATTT
CCTATACCTCACAGAAGTAGCCCATCGCCTAATAGATAATAACTCATTGTATAGTTATGACCAT
TTACGATATAGTTCACCTGAGGAGCAATACTCTCCGTCAACTTTGCAAATAAACAAGATCGGTG
AAGCACAATGATATCATTACATGATTCAGGAAAACTAAAAAATGCATGTCATATCGAAAGATCA
TTAGAAGCCATTAATATCCTATAGAATAATAGTGGGCTCCTCCACGTGGGGGCCCTTGTACTGA
TCCTGCAATTCGAGTGGATAATTGTTCCATGCACAATGGATACAATCAATAGATCTTAACATAT
TAGGAAATCCATTTGGCTTATGTGTTCTCAGTAACCGTGTTGTGTCATCCTCATAGGTGATCTC
AAATATTCATCTTAAAAAATATCAGTTATTACAAGAATAAACCTTGACTCCAAATTCAATGAAA
GTGGACATGAATAAGCATCTTTATTTACTCATACAACGAAGGAACATAAACAGAAGAAAAAAAA
TTAGGAACAATAGAAACTACGGAATTTCTTAATCTAATTTCACCGGGACTGAACGTGTCCTACA
GACGCCCGCCATGTCGTCGGAGCGAGCCCATATGTACGCATCACTAATACGAGGCTGGAAACGG
GCCGGGCCCTAATACTGCTTGTTGGGCTTGGGTCGGAACATGCTGACGTCTCTGTGGTTCGCCT
CCTGAAGCGGCCTCGCGTTGTTCTCCATGTCCTGGCAGCAGATAAAAACAGGGACGAGGTTTGG
TCAGGCCAGCTGAGAAAAAAAATACCAAAACCAGCAACGTTCATGTTGCTTGCAGATTCAAGTT
GGTGAGGTGAGATCCGTAGGCTTACGTCGTGCACAGCTTCCCTGAGAAGCTCCAGCTGGTGCTT
GGACACGCTGCGAACCTGCAGAACAAAAGAGCCAAGAACCGCTTGAGAAACAGACGAAACCTTC
ATCATATTCATATGACTGACCCATGCGTACGTGGCGCGACCAAACCAACCAACGCATATTGATC
GAATGATGAGCGATGCATGTGAGGGTATGAACTGTACAAATTAAAACAAAGGCTAAAGCAGCAA
GCGTACCCTCTTGACGATGGTCCAGATGACGCCCTCGGTGCAGGGCGGCGCGGTGAGCGAGCCG
ACGTAGCGGTAGTAGACGCTGGCGCGGCCGCGCGCGCGCCGGGGGTCCACGACGCCCACGCGCA
TCTCCCGGTCCCGCACGTCCGCGACGCGCCTGATGGCGGGCTCCAGCTGGCGGAGCAGCGCGTC
GTCGTGGCCGCCGATCTCGTACAGGACGGCGATCACCGCGGCCTTGTTCTCGGCGCTCTCGTGC
ACCAGGTGCAGCTCCATGTCGTACCGGCGGCCGTCGACGGTGTGCTCGGTGGGCGAGTGCCAGT
GCAGCTGCCTCAGGTAGTAGGCCGTGCCGTTGATCACCAGGCTCCCGGCGTCGCCCTCGAACCT
CACC
Conservation Information
Conserved circRNAs NA
PMCS 0.090219119
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs zma-miR11970-3p
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018