Detail information of Zm00001d031778_circ_ag.1


General Information
CircRNA Name Zm00001d031778_circ_ag.1
ID in PlantcircBase zma_circ_006728
Alias Zm01circ00121
Organism Zea mays
Position chr1: 201516215-201520896  JBrowse»
Reference genome AGPv4.38
Type   ag-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Zm00001d031778_circ_ag.2
Support reads NA
Tissues leaf, endosperm
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACGGGCCGGGCCCTAATACTGCTTGTTGGGCTTGGGTCGGAACATGCTGACGTCTCTGTGGTT
CGCCTCCTGAAGCGGCCTCGCGTTGTTCTCCATGTCgtcgtgcacggcttccctgagaagctcc
agctggcgcttcgacacgctgcggacctgcacaagaacactcagcataataaatctcagcgacc
gatcagat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTCGTGCACGGCTTCCCTGAGAAGCTCCAGCTGGCGCTTCGACACGCTGCGGACCTGCACAAGA
ACACTCAGCATAATAAATCTCAGCGACCGATCAGATGACCTCTGGAGCAAACGGGAGCTGAAAG
TTTGGAATTTGGGATGGAAAGGCGGAAGCCGAAGCCGAAGCCGACCTTCTTGATGATGGTCCAG
ACGACCCCCTCGGAGCAGGGCGGCGTGGTGAGGGAGCCCATGTAGCGGTAGTAGGCGCTGGCCG
TGCCGCGCGCGAGCCGGGGGTCCACCACGCCGATGGGCTCCTCCCTGTCCTTCCTGTCGGCGAT
CCGGCGGATGAAGGGCTCCAGCCGAAGTAGGAACGGGTCCGGGACGAGGCCGATCTCGTAGAGG
ATGCCGATCACCGCCGCCTTGCCCGCCGCGCTCTCGTGCACCATGTGCAGCTCCATGGCGTACC
TGCATGCATGTAGACGACTAGTAATCAGTAATTAAGCGGGCGACGTCAGCGCTTTATCAGCTCG
ACGACGGCGACGGCTCTCACCTGCGGCCGTCGACGGTGTGCTCGGAGGGCGAGTGCCAGTGCAT
CTGCCTGAGGTCGTACGCCGTGCCGTTGATCACCAGGCTGCCGGCGTCGCCGTTGAACCTCACC
TGCAGTCAGTCAAGTCACCGGGCTGGCATAGTCAGAGTCAGGGACGACGACGACCGGCCGGCCG
GCCGGGAGGCAGCACGTACTACGTACTACTACGTAGTAGGCATCAATGACCCCAGCACCGCCAG
CGAGCTAGCGAACCGTCTTGCATGCTGTCACATACACACATACCATGATGTCGTGGCCGCGGTT
GACGATGGAGGCCTGGGCTGGGCGGTAGGAGTGGTTGAGGAAGCCGAGGGCGGGCACCAGCGAG
ACGCGCTCGCGGGCGAGGTCGATCGGGGACTGCATGCGCCCAGCGCTGCAGTTGGCCCACTCCG
GCTTGATGCTGCCCCAGTTCTCCGGCCCGTTCGCGTCGCCCGGAATGTAGTTGAACTCCTCCTC
GTCCTCCGTTTCCTCCTGGCCTCTGGCGGCCGGGATGGCGGCGGAGAGCAAGAGGGCGGCGGAG
ATCAAGAGCGCGGTGAGGCCGCGGAGGTGGCGAGCTGGACCCATGCCCTCGCCCTTCTGTTGCC
TGACGTCGTCTGTGCGCGGACGGCGCGCTTGTTGGTCGTTTTGGCCGTTGAGCTGATTTGGGAT
TGGGAAGAAGAGCACCCCGCACCGAAAATATATAATAGAAGCCGCTGTGGGGGTATGGAGGCTA
TAGATGTCCAATAAGCATGACCGGACCTGTTCTATCCCACTGTACTAAAAAACGTTACCTAAAT
TAACGTAAAGCCAGGATAGGTCATGATTCGTGGCTCCTCAGATCGTAAAGCTGAAATCGGAGGG
GCTCAATTCATTGCCCTATTCTCGTCTTGTCCTCATCTTATCACCAGAGTGCTAGGTGGGTCTG
ATGGCGATGATGCACAACGTCTATGTTTAAAGCATGTATCAAAACTGGACTCTATATCCATGAT
AATTAACTTTACATAAGGTTTTCTTCGACAGTTCAGGCATCTGTCTGTGGACTGACATTTGGAT
GGATGCCTCTCCTACAGTGTTTGTTTGCGTGGGGCATGTAGAAAAGGTAGGAGTGCAACAGCAA
AATGTTGCTCTCCTATACTATTGGTTCGTATGAGGCATTTGTTGAAGACGTACATATTCCATCA
AACTAATATACTAACAAAATGCACACTAATTAGTAAACTAACCACATAATAATCGAATTTACTA
GCTTAATAATATAAAATTTGTGAAGGGCTTAATAATACTCACCTTGTCGGGTGAAAGCACAAGG
CTAGCGTTGAAGAGATGAGACGGACACGGAAGGGGTCGGGTCTCGGGTGGAGAAAGGGGACTTT
GTACGTAGGGACGACGTGGCGTGGCCGGGCAGGTGCACGGTGGCTGCGACGTATGTAGTAGGCG
TGGAGGCAGAGGCGACAATGAGAGAAAGGAGTGTGAGCCATTGTAATTCATCTAATTTTCTTCA
TCGGTCGGCGGTGCTGTGGTCAATGAAAATTGCTCAGTTTTTATGAACTAAGCTAAAAACATAA
AAAAAAAATATTGGTCGATATAAGTCTTATTTTATTTATATTGTGAGCGATGGAACGTCCATTG
TGAACATGTGTCCATTGTGAACATGTGCCCACCGTCGCTGATTCTAAAGACAACCTGCAAGTTA
ATGTTATGATGCTCGGTTTTCACGTTAATGTTATGATGCTCGGTTTTCACGGGTCGCGATCGGC
CTGGAACTGATCGCAGCCGCCAGGCAGGGCAGTAGTGAACGTGGAAGATGCATGCATGCAGTAC
AAAAGGACTGGAAGGTTTTGGCAGTTCGTGCCGTCTACGCAGCAGCCACCATGATCGCAGACGC
AGAGTACGAACGGAGAGCGATGCATGCTGGATGGCGGCCGTTATATACGACCATAGCTCGTTTC
TGCCGCATCCGAGTACGGTACCACACGATAGGACATGTACAGTATAGGCTGACTTCATATGCCC
TCCCTTAACGGCCCCGTACCGTAAATATACCGTGTACTTGGTACCATTCCAGTAGACAAGTCGT
TAAAGCTTACTCCCTCTTCTCTTATGATGTACTATTAGTTGTTGTTTAGGGCAATGACATGCTC
TCCAAAATATAACTTTAACCAATGTTTTTTAATTAAAATACAGTTAAACTCTTAATACATTTAT
ATTTTTATAAAAGTACTTGTTAAGACAAATCGGTGTATATAAACATTATGTTTCAAAACTATAT
AATAAAATAGTTATTTATAGTCAAAATTTTATAAGTTTAACTCAAACCTTTTTTAAAAAACGAC
AACTAATAGGACACCAGAGGGAGTATGCGGCTATAATAGGGTCCTACTCGTACTTTCTTAAACG
TGGCGTCTTCGCCTGCTCACTCCGGCCCCATGCATGGATCAGAGCCAGGGAGGGAGGCTCGAGT
CAAGAGACATACCTATCAAATCTGGAGGATGTGTCGACGTGCAAGTTCCGACGTGTCGGGAGAT
TTGCTTTGCCTTAGGCTCTCTTCAGCAACTACAGTTCTAGTCATAAAGAGAAATCGAGTGCCTT
AAGAATTCGAATTTCTTGCAAAACACCGTATTCCATTAAGAACTTGGGGTCATTCTCTTTATAT
CTAGGCCATGGCAAAAAATGGTATACCAATTGAGAGACGAATTGATAGAAATAAAATCACGCCA
TGCATAACATGTAGATATATTGCCATAACAATTAAATTGAAGCATACACAATCTACAATAAGAT
GGATCTTTTCAGAAGAAGGGAAAAGCATTTTAAGACCATTCTATAAGAAACGTCATAACACGTA
GATTTCAGTTGTTGGGCTGTATTTTAGTGATGAATAAATAGAACGTCATGTAATAACGTCATAA
AGCCCAAATATGTAACATCATAAATCATCATGTAAAATCATTGTGACAAATAAATTTGTCAGTA
CATTTAATTTACCTTCATGAACTGTGAAATCCTATGACAAAGGTGTATTGCCATGAGGTTATTT
ATGCGGCTAAATAAATATGACAATGTAGAACTTGTATGATGAAAATATAGTCTATCAATATATG
TATTTCATCTTTTGTCTACATCCATCTCTCCCTGGAATGTGCTATTATTCATTCAGATAACACT
ACAACAGAACTGTTGTGAGCAAACTTCTTCAATAATTGAACATGATTTATATCGACACACTGTT
CTGGGAGACATCTTTGTAGAAACTAAAACAAAATATTGACTGAAAAATAACATGAACATGTCCT
CCATGGCTGCTACACGAATGCACATCCACACAAATCAAGATAGGAGAACATCAAAAACTCTTTT
CGACATCCTTATTTATTGCTTCCTCTACTTTGGAAAAATATTTCCTATACCTCACAGAAGTAGC
CCATCGCCTAATAGATAATAACTCATTGTATAGTTATGACCATTTACGATATAGTTCACCTGAG
GAGCAATACTCTCCGTCAACTTTGCAAATAAACAAGATCGGTGAAGCACAATGATATCATTACA
TGATTCAGGAAAACTAAAAAATGCATGTCATATCGAAAGATCATTAGAAGCCATTAATATCCTA
TAGAATAATAGTGGGCTCCTCCACGTGGGGGCCCTTGTACTGATCCTGCAATTCGAGTGGATAA
TTGTTCCATGCACAATGGATACAATCAATAGATCTTAACATATTAGGAAATCCATTTGGCTTAT
GTGTTCTCAGTAACCGTGTTGTGTCATCCTCATAGGTGATCTCAAATATTCATCTTAAAAAATA
TCAGTTATTACAAGAATAAACCTTGACTCCAAATTCAATGAAAGTGGACATGAATAAGCATCTT
TATTTACTCATACAACGAAGGAACATAAACAGAAGAAAAAAAATTAGGAACAATAGAAACTACG
GAATTTCTTAATCTAATTTCACCGGGACTGAACGTGTCCTACAGACGCCCGCCATGTCGTCGGA
GCGAGCCCATATGTACGCATCACTAATACGAGGCTGGAAACGGGCCGGGCCCTAATACTGCTTG
TTGGGCTTGGGTCGGAACATGCTGACGTCTCTGTGGTTCGCCTCCTGAAGCGGCCTCGCGTTGT
TCTCCATGTC
Conservation Information
Conserved circRNAs NA
PMCS 0.1703347
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Han et al., 2020