Detail information of Os10g0479800_circ_g.1


General Information
CircRNA Name Os10g0479800_circ_g.1
ID in PlantcircBase osa_circ_007164
Alias NA
Organism Oryza sativa
Position chr10: 18039426-18039675  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os10g0479800
Parent gene annotation Protein of unknown function DUF1336 domain containing protein. (
Os10t0479800-01)
Parent gene strand +
Alternative splicing Os10g0479800_circ_g.2
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   CA-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGAATTGCTCTTTTCCTTCTTTTTTTTTTGAGATGAGAGATCAGTAAATAACACAGCTGAACA
ACCTCATGAAAGAACTCCTTGATTCCTTCCTACTATgtaattgtggcatatctaatcaagtaat
tacacaacgagcttgatgtttcttttacttctcaagattcagaacagtgctgtttcttttttcc
tttaatga
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 250
Transcript exons: 18039426-18039675
GTAATTGTGGCATATCTAATCAAGTAATTACACAACGAGCTTGATGTTTCTTTTACTTCTCAAG
ATTCAGAACAGTGCTGTTTCTTTTTTCCTTTAATGAGATAAAAGATTCAGAATGGATCAGTAAA
TAGTGCTATGAGATGAGAGTTTCAGAATTGCTCTTTTCCTTCTTTTTTTTTTGAGATGAGAGAT
CAGTAAATAACACAGCTGAACAACCTCATGAAAGAACTCCTTGATTCCTTCCTACTAT

Genomic sequence GTAATTGTGGCATATCTAATCAAGTAATTACACAACGAGCTTGATGTTTCTTTTACTTCTCAAG
ATTCAGAACAGTGCTGTTTCTTTTTTCCTTTAATGAGATAAAAGATTCAGAATGGATCAGTAAA
TAGTGCTATGAGATGAGAGTTTCAGAATTGCTCTTTTCCTTCTTTTTTTTTTGAGATGAGAGAT
CAGTAAATAACACAGCTGAACAACCTCATGAAAGAACTCCTTGATTCCTTCCTACTAT
Conservation Information
Conserved circRNAs osi_circ_008526
PMCS 0.274062067
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017