Detail information of BGIOSGA033141_circ_g.5


General Information
CircRNA Name BGIOSGA033141_circ_g.5
ID in PlantcircBase osi_circ_008526
Alias Chr10:19795522_19795774(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 16869602-16869855  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA033141
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   Yes-No
Splicing signals   TG-CA
Number of exons covered BGIOSGA033141-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATTGCTCTTTTCCTTCTTTTTTTTTTTGAGATGAGAGATCAGTAAATAACACAGCTGAACAAC
CTCATGAAAGAACTCCTTGATTCCTTCCTACTATCAggtaattgtggcatatctaatcaagtaa
ttacacaacgagcttgatgtttcttttacttctcaagattcagaacagtgctgtttcttttttc
ctttaatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTAATTGTGGCATATCTAATCAAGTAATTACACAACGAGCTTGATGTTTCTTTTACTTCTCAA
GATTCAGAACAGTGCTGTTTCTTTTTTCCTTTAATGAGATAAAAGATTCAGAATGGATCAGTAA
ATAGTGCTATGAGATGAGAGTTTCAGAATTGCTCTTTTCCTTCTTTTTTTTTTTGAGATGAGAG
ATCAGTAAATAACACAGCTGAACAACCTCATGAAAGAACTCCTTGATTCCTTCCTACTATCA
Conservation Information
Conserved circRNAs osa_circ_007165 osa_circ_007164
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021