Detail information of Os04g0102700_circ_g.6


General Information
CircRNA Name Os04g0102700_circ_g.6
ID in PlantcircBase osa_circ_022866
Alias NA
Organism Oryza sativa
Position chr4: 193516-193832  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0102700
Parent gene annotation Similar to N-acylethanolamine amidohydrolase. (Os04t0102700-01)
Parent gene strand -
Alternative splicing Os04g0102700_circ_g.7 Os04g0102700_circ_g.8
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0102700-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCCCTTCAGTCTGTTAACTAACCCTTTGATGGATATGGGAAGCAGTCAATGTCATCCTTAATGG
CGATAAAGATCCCGTCCAAGATGGAAATTGGGTTTCccatagtttggattgtttccagttactc
caaggcctagctcatgcatattagctttcccaatgaataacactccacatttccgcaaacgagc
aacacaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCATAGTTTGGATTGTTTCCAGTTACTCCAAGGCCTAGCTCATGCATATTAGCTTTCCCAATGA
ATAACACTCCACATTTCCGCAAACGAGCAACACAAACTGCGTCTTTCTCCACAGAGCGAATTTT
GTCGAAAAATGTAGTAGCACCTGTATTTTTTTTAAAAAAAAGGTATAAGTTGGAATACGCTTCT
CAGATACAGCAACCAAATTGCCAGGCCCCTTCAGTCTGTTAACTAACCCTTTGATGGATATGGG
AAGCAGTCAATGTCATCCTTAATGGCGATAAAGATCCCGTCCAAGATGGAAATTGGGTTTC
Conservation Information
Conserved circRNAs NA
PMCS 0.291015957
Functional Information
Coding potential Y
Potential coding position 193577-193550(+)
193521-193792(-)
193564-193792(-)
Potential amino acid sequence MNNTPHFRKRATQTASFSTERILSKNVVAPFDGYGKQSMSSLMAIKIPSKMEIGFPIVWIVSSY
SKA*(+)
MGNPISILDGIFIAIKDDIDCFPYPSKGATTFFDKIRSVEKDAVCVARLRKCGVLFIGKANMHE
LGLGVTGNNPNYGKPNFHLGRDLYRH*(-)
MHELGLGVTGNNPNYGKPNFHLGRDLYRH*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017