Detail information of Os06g0473200_circ_g.2


General Information
CircRNA Name Os06g0473200_circ_g.2
ID in PlantcircBase osa_circ_030834
Alias NA
Organism Oryza sativa
Position chr6: 15815478-15818053  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os06g0473200
Parent gene annotation Similar to NPK2. (Os06t0473200-01);Similar to Mitogen-activated
protein kinase kinase 3. (Os06t0473200-02)
Parent gene strand -
Alternative splicing Os06g0473200_circ_g.1 Os06g0473200_circ_g.3 Os06g0473200_circ_g.4 Os06g0473200_circ_g.5 Os06g0473200_circ_g.6 Os06g0473200_circ_g.7
Support reads 1
Tissues shoot, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os06t0473200-01:5
Os06t0473200-02:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATCAGGCATGTAGAATGCACCCTGGAATTCAACTAAACCAATATAACAACATGCTTCACATAA
TGTTCTCATCTCATTCAGAATTTGTTGTCTCTTCTCctctgctatttgctttaatctttctgtt
ggatcaacaatacttttgacataagctaccaagtccacggtagtgttttcatacctcttgatga
atgggtgt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 731
Transcript exons: 15815478-15815585,15815854-15815967,15816398-15816549,15
817587-15817724,15817835-15818053
CTCTGCTATTTGCTTTAATCTTTCTGTTGGATCAACAATACTTTTGACATAAGCTACCAAGTCC
ACGGTAGTGTTTTCATACCTCTTGATGAATGGGTGTGACAAAAGCTGCTCACACGAAGGCCTTG
CATCAGCGTCTTTTTGCAAGCAGTCATTGATGAACGAACAAAACTCAGATGAATAAGAATCTTT
TGGTGGTGTTGGTGATGGATCATCCAGAATCTGCAGCATGAGGTTGGCTGGGCCTTCATTCACA
TTATATGGAAATTTACCAGTAGCACACTCCAATATTGCTAGTCCAAGACTCCAAATATCAGCAG
CATAAGAGTAGTTCTCGTTACGAATTCTCTCAGGTGACATATATGTGACTGTGCCATGGCCATC
GTATTATCCAAACCAGCACTCACTCCAAAATCTGTTATCTTTGCCTCACCCTTGAGATTTACCA
GCAAATTTGCTGGCTTTATATCTCTATGCACTAGATGTCTTACTTCATGCAAGTAGCGCAAACC
GAGCAATACTTTCTGCAGCATATGTGCAAGAACTGGTTCTGGTATTGATTTCTTAATCTTTATA
ACATTAGCTAAGGACCCACCATCCATGTATTCAAGGGCGATGCTTATTTGTCCAGAATCAGGCA
TGTAGAATGCACCCTGGAATTCAACTAAACCAATATAACAACATGCTTCACATAATGTTCTCAT
CTCATTCAGAATTTGTTGTCTCTTCTC

Transcript length: 747
Transcript exons: 15815478-15815585,15815854-15815967,15816398-15816565,15
817587-15817724,15817835-15818053
CTCTGCTATTTGCTTTAATCTTTCTGTTGGATCAACAATACTTTTGACATAAGCTACCAAGTCC
ACGGTAGTGTTTTCATACCTCTTGATGAATGGGTGTGACAAAAGCTGCTCACACGAAGGCCTTG
CATCAGCGTCTTTTTGCAAGCAGTCATTGATGAACGAACAAAACTCAGATGAATAAGAATCTTT
TGGTGGTGTTGGTGATGGATCATCCAGAATCTGCAGCATGAGGTTGGCTGGGCCTTCATTCACA
TTATATGGAAATTTACCAGTAGCACACTCCAATATTGCTAGTCCAAGACTCCAAATATCAGCAG
CATAAGAGTAGTTCTCGTTACGAATTCTCTCAGGTGACATATATGTGACTGTGCCTACAAAGGT
AGCACACATGGCCATCGTATTATCCAAACCAGCACTCACTCCAAAATCTGTTATCTTTGCCTCA
CCCTTGAGATTTACCAGCAAATTTGCTGGCTTTATATCTCTATGCACTAGATGTCTTACTTCAT
GCAAGTAGCGCAAACCGAGCAATACTTTCTGCAGCATATGTGCAAGAACTGGTTCTGGTATTGA
TTTCTTAATCTTTATAACATTAGCTAAGGACCCACCATCCATGTATTCAAGGGCGATGCTTATT
TGTCCAGAATCAGGCATGTAGAATGCACCCTGGAATTCAACTAAACCAATATAACAACATGCTT
CACATAATGTTCTCATCTCATTCAGAATTTGTTGTCTCTTCTC

Genomic sequence CTCTGCTATTTGCTTTAATCTTTCTGTTGGATCAACAATACTTTTGACATAAGCTACCAAGTCC
ACGGTAGTGTTTTCATACCTCTTGATGAATGGGTGTGACAAAAGCTGCAAGATGTTAAATATTC
TTGTCAGCAAAAGGAAAAGAAAAGTGTATCACAATCCACAAAATTGTGTTGATATGGAAGATAT
ATTGACATAACATTGTGATTAGATCAAGCCATTACCAATCACAATTTATACTATGCTTATTATA
ACAACTAATGATACTCGAAAGAACCATGATACCTTATCACAAACGATATGCCTTTAATTCATAT
ATACAGAACTCAAACTTCTTGAAAATCAGCACATACATTACACAAAATCTCTTTACCTGCTCAC
ACGAAGGCCTTGCATCAGCGTCTTTTTGCAAGCAGTCATTGATGAACGAACAAAACTCAGATGA
ATAAGAATCTTTTGGTGGTGTTGGTGATGGATCATCCAGAATCTGAAATACTAAGTTTGTAAGG
AAACCAATGAATTGCACAAAAAACATTACAAAATGTTAAATAACTTGGCCTCCAGTGCCATGTG
ATGCTTTGTCTCTATTTTTACCTTGCTGGGTTCAAACAGGAATGCATTCAGGTTCTAAACTAAG
TCTATAAATTATCTGACTGTAAATATAATATTATTACATTAATACTATTGATCGTATGAGTGTC
GCAACTCGCAAGTTGTGACCACTTTCTTCCAAAACTTGCAGGAATGGAATATTCTTAACCATGT
ATCGAATCACAAAACCATCCAACCAAAAGGTGCAAACAGTGGTGAGTAGTCACAGTTGATCAAC
AATAGAAGAGGTCATATTGCATACTACCAAAATAAACAATAATTATAAACAAATAAATAAATAA
AAACTGGCCACGGAACCACATTACCTGCAGCATGAGGTTGGCTGGGCCTTCATTCACATTATAT
GGAAATTTACCAGTAGCACACTCCAATATTGCTAGTCCAAGACTCCAAATATCAGCAGCATAAG
AGTAGTTCTCGTTACGAATTCTCTCAGGTGACATATATGTGACTGTGCCTACAAAGGTAGCACA
CTGGAACATATTTATTTAGCAGAAAATATATCGTTGATTCAATCTAAATGATTTGACGTCATTG
AAGTACTATTCAAGAACAACTAGCATACAAGAAACATCAAAGATCATGCACACATGACACATCA
TATCCTGTCTGCAGAATGCCAAGTTTCATGATTCACTTGCTTATGTATATACTCCTTCCGTTCA
CAAATAGGTACTCCCTCCGTCCCAAAATAGAAGAACCTATGATCGGATGGGACATTTCCTACTA
CTACGAATCTGGACAGGCAGTCTGTCTAGATTCATAGTATTAGAAAATGTCCCATCCGTTTAGG
TTCTCATATTTTGGGACGGAGGGAGTATCATTTTAAGATTCACGCAGTCAAACCTTGAAAATAT
TAAATCAACAATATATGCAAAAGAATTAGGATTGGATATTAAAAATGATACCAGTAGACGCATC
ACGAAAAACGCTTACATGTAACTATATTTCCAATAATTTTTATAAATATATTATTAGAATAAGA
AATGATAAAACATCTGCATTGGAGACTGTGTCAATGTCCTAAATAACAAGTATAAAATAACAGA
GGAATTTTTTTTAGTCTTTAACTGTATTAGTTTTCAGTTTCTAATTTTTTAGCTCTGTTGGTCT
TATAGACCTTTGTTTCCCCCTCAGGCTTTGAAGGTCTTTGCACTTAATTAACGACTCCATCTGT
CCCAAAATGATGCTATTTCTCCACCTACCCCTTATCTCAACCAATCACAACCATTCTCCATTTG
ATTTCTTCACCTACTTTCTCTTCTCAACCAATCACAACCTTCCCCAAATCATTTCCACCTACTT
TGTTAATACCAATGCTCAATGCCAGAAATGCTTACGTTTTGGGACGGAGGTAGTACAGACTATA
GAGAATATTGTAATATATATTTATCAGCAGGGTCCTCCCTACTATTTCCCTTTAAACAATCAAA
TTGGCATATAAGGAACACAAAAATAAAACTGTGAAGATTGTAACCAAGAGAAGTAGCATACCAT
GGCCATCGTATTATCCAAACCAGCACTCACTCCAAAATCTGTTATCTTTGCCTCACCCTTGAGA
TTTACCAGCAAATTTGCTGGCTTTATATCTCTATGCACTAGATGTCTTACTTCATGCAAGTAGC
GCAAACCCTGTAGAATTGTACAACAGAACAAATTATATAGTTTAAAAGGTTGATCAACCAGCCT
GAGTTATACTAACAATAACATAGAAATGAAGGGCAGATGTGAAAGATCCATACGAGCAATACTT
TCTGCAGCATATGTGCAAGAACTGGTTCTGGTATTGATTTCTTAATCTTTATAACATTAGCTAA
GGACCCACCATCCATGTATTCAAGGGCGATGCTTATTTGTCCAGAATCAGGCATGTAGAATGCA
CCCTGGAATTCAACTAAACCAATATAACAACATGCTTCACATAATGTTCTCATCTCATTCAGAA
TTTGTTGTCTCTTCTC
Conservation Information
Conserved circRNAs osi_circ_016184
PMCS 0.235022574
Functional Information
Coding potential Y
Potential coding position 15817970-15815521(+)
15816537-15816471(-)
Potential amino acid sequence MHPGIQLNQYNNMLHIMFSSHSEFVVSSPLLFALIFLLDQQYF*(+)
MSPERIRNENYSYAADIWSLGLAILECATGKFPYNVNEGPANLMLQILDDPSPTPPKDSYSSEF
CSFINDCLQKDADARPSCEQLLSHPFIKRYENTTVDLVAYVKSIVDPTERLKQIAEEKRQQILN
EMRTLCEACCYIGLVEFQGAFYMPDSGQISIALEYMDGGSLANVIKIKKSIPEPVLAHMLQKVL
LGLRYLHEVRHLVHRDIKPANLLVNLKGEAKITDFGVSAGLDNTMAMAQSHICHLREFVTRTTL
MLLIFGVLD*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017