Plant Circular RNA Database

Detail information of Os08g0471900_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os08g0471900_circ_g.2
					
						ID in PlantcircBase
						osa_circ_037319
					
						Alias
						Os08circ10726
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr8: 23220758-23222664  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						SMALT, Segemehl
					
						Parent gene
						
							Os08g0471900						
					
						Parent gene annotation
						
							Zinc finger, ZPR1-type domain containing protein. (Os08t0471900-
01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os08g0471900_circ_g.1 Os08g0471900_circ_g.3 						
					
						Support reads
						2
					
						Tissues
						leaf and panicle
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os08t0471900-01:5

General Information
CircRNA Name	Os08g0471900_circ_g.2
ID in PlantcircBase	osa_circ_037319
Alias	Os08circ10726
Organism	Oryza sativa
Position	chr8: 23220758-23222664 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	SMALT, Segemehl
Parent gene	Os08g0471900
Parent gene annotation	Zinc finger, ZPR1-type domain containing protein. (Os08t0471900- 01)
Parent gene strand	-
Alternative splicing	Os08g0471900_circ_g.1 Os08g0471900_circ_g.3
Support reads	2
Tissues	leaf and panicle
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os08t0471900-01:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TTCTGTGGATGGTTCAACAAGAAAACCAAGTGCTGCCTGTTGCTCACGCATCCTTTCATAGAAT
CTCACAGATAACAAAGGATCTGATGAAGGTGCATTCcctcgcatattttcacaattaaaccttc
aactgttgtaacaataccacccaatgttccacttgctagctccaactcgagttcaggtactttt
acgccagc

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 605
Transcript exons: 23220758-23220866,23221289-23221378,23221485-23221555,23
222250-23222316,23222397-23222664
CCTCGCATATTTTCACAATTAAACCTTCAACTGTTGTAACAATACCACCCAATGTTCCACTTGC
TAGCTCCAACTCGAGTTCAGGTACTTTTACGCCAGCTGAATCTGACTTTATGACATCACGTGTA
AGATCTTTTCCGTTCTGCACACGTAGTGTAATTTTCTTTCCTTTGGCTGGGATTTCACCACCAG
GCTTCAACTCTGAGTTGCGATAGCCGCACATGTCGCATGTTGTTGCCATAACAATAACCTCACG
AAAATATGGGATTTTTGTAGCAAAGAAACGAGTGACACACTCAGTTCCACAGGCCCCACATGTT
GATGGCAAAGTATCAACCTCTTCTGGTGCTGAATATCTGCACAGCGCTGCAGCAACTTCATCAG
GGTTTCCTTGAGCTATAGCACGGCGACCTGCAACAGCTCCAACCGAACCGTGGGGCTCCTGCAA
CACCTCAGAGTTCCCTTCCACAGTTGAAGCATGATTAACAGGCTGATCCCCAGGTTCTTCTGTG
GATGGTTCAACAAGAAAACCAAGTGCTGCCTGTTGCTCACGCATCCTTTCATAGAATCTCACAG
ATAACAAAGGATCTGATGAAGGTGCATTC
						
					

						Genomic sequence
						
							CCTCGCATATTTTCACAATTAAACCTTCAACTGTTGTAACAATACCACCCAATGTTCCACTTGC
TAGCTCCAACTCGAGTTCAGGTACTTTTACGCCAGCTGAATCTGACTGGAAAACAAAAAGGAAA
AAAGAACTCCAAATTAACAAAATCGTGTATCAAACTTGATCCAAACACACCAAAATTGCAACTG
AAGAGTGCATCTAACAATGCAGTCCTACGTTGGAGAGCATTTGTTTCGTTCTTCTAATACAAAA
GAAAATTAAATTTATAGGCTTGTCTAGTTCTTAATTGCAAGGACACCCAATCTTGTATAATGGA
AAAAGGGGAACATAAATATTTATATCATTTTGCCCATTGAAAAGAGGGATTCTGACTTACAAAG
CCAGATTTATGAGTCCAAAATGAAGTACCAAAAATACTTCCCACCCTAGATAAGTCAGAAATCT
CATGCACAAGCAGGCACACTAAAAAAGTTGCATGCAATGCAAAGTTGCAAACAACAACACCGCC
AAGAAAACAAATTTCTGACCTTTATGACATCACGTGTAAGATCTTTTCCGTTCTGCACACGTAG
TGTAATTTTCTTTCCTTTGGCTGGGATTTCACCACCAGGCTTCAACTGATAGAACAAAAAGAAA
GCCGTTTTAAGTTCAGAGTTGTCACCAATGTACAACATTTTTTTTCTAAAAGAAATGCATGTAT
GACTACGGAAGTCTGGAACTGACCTCTGAGTTGCGATAGCCGCACATGTCGCATGTTGTTGCCA
TAACAATAACCTCACGAAAATATGGGATTTCTAACCAAAGGTCAAAGACCAGACACTAGCAAAT
ATTAATAATTAGCAGTACAATATCACTAGAGAGTTCTGTACGATTCAAGGATCCAATCAAAACA
TGTTACAACTACACTGCGTGACAGCAATTACTGTGGAACCTAGCTCCACTAATCATATGCTACA
AACCAGCCAGTAAAAGACATGCATGCTTTGGCCATCAATCCATCATCCAGCACGGTCACACACA
AAAAAAATTCCATCAATCCCCATGTTTAGATCATAAAACCATTACGTAAGCCTAAATTGGCTGT
ATCTCAGGACACTATAAACCATATTTCCAAGCAATTTGACCGTTACTGCCAATTTTCCAGCATA
TTATTTATGCTTTGCACTATGATATACTCCCTAACACATAAAGCATGCAAGTAACCAGCAAGAA
CATTCTAAATTAAAGTCCCAAATATTTCTTAGCCCCTCATTTTTTAAGAGGAACATTCTAAATT
AAAGTCCCAAATATTTCTTAGCCCCTCATTTTTCAAAGAGGCCAAGATTGATCACAGAATCAAA
CAAGCATATAGAAACACTACAGATGACCTATTTGACTATTGCTGATATTATCAACATGTTTTAC
TTAAAAACGAACATACTCTATTTCTCTATTCTTAGTTTAAGAGTCCATATGGAAGAAATAGTGA
ACAAAAGGTGAAAAGGATACTTGTAGCAAAGAAACGAGTGACACACTCAGTTCCACAGGCCCCA
CATGTTGATGGCAAAGTATCAACCTGACCAAGTAAATTTTTGTAAGCATGAATGAACATTAGTC
TTGAATAAGGTAATTGCCGTACAACTGAATAAAGCATACCTCTTCTGGTGCTGAATATCTGCAC
AGCGCTGCAGCAACTTCATCAGGGTTTCCTTGAGCTATAGCACGGCGACCTGCAACAGCTCCAA
CCGAACCGTGGGGCTCCTGCAACACCTCAGAGTTCCCTTCCACAGTTGAAGCATGATTAACAGG
CTGATCCCCAGGTTCTTCTGTGGATGGTTCAACAAGAAAACCAAGTGCTGCCTGTTGCTCACGC
ATCCTTTCATAGAATCTCACAGATAACAAAGGATCTGATGAAGGTGCATTC
						
					

			
		

Sequences
Splice junction sequence	TTCTGTGGATGGTTCAACAAGAAAACCAAGTGCTGCCTGTTGCTCACGCATCCTTTCATAGAAT CTCACAGATAACAAAGGATCTGATGAAGGTGCATTCcctcgcatattttcacaattaaaccttc aactgttgtaacaataccacccaatgttccacttgctagctccaactcgagttcaggtactttt acgccagc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 605 Transcript exons: 23220758-23220866,23221289-23221378,23221485-23221555,23 222250-23222316,23222397-23222664 CCTCGCATATTTTCACAATTAAACCTTCAACTGTTGTAACAATACCACCCAATGTTCCACTTGC TAGCTCCAACTCGAGTTCAGGTACTTTTACGCCAGCTGAATCTGACTTTATGACATCACGTGTA AGATCTTTTCCGTTCTGCACACGTAGTGTAATTTTCTTTCCTTTGGCTGGGATTTCACCACCAG GCTTCAACTCTGAGTTGCGATAGCCGCACATGTCGCATGTTGTTGCCATAACAATAACCTCACG AAAATATGGGATTTTTGTAGCAAAGAAACGAGTGACACACTCAGTTCCACAGGCCCCACATGTT GATGGCAAAGTATCAACCTCTTCTGGTGCTGAATATCTGCACAGCGCTGCAGCAACTTCATCAG GGTTTCCTTGAGCTATAGCACGGCGACCTGCAACAGCTCCAACCGAACCGTGGGGCTCCTGCAA CACCTCAGAGTTCCCTTCCACAGTTGAAGCATGATTAACAGGCTGATCCCCAGGTTCTTCTGTG GATGGTTCAACAAGAAAACCAAGTGCTGCCTGTTGCTCACGCATCCTTTCATAGAATCTCACAG ATAACAAAGGATCTGATGAAGGTGCATTC
Genomic sequence	CCTCGCATATTTTCACAATTAAACCTTCAACTGTTGTAACAATACCACCCAATGTTCCACTTGC TAGCTCCAACTCGAGTTCAGGTACTTTTACGCCAGCTGAATCTGACTGGAAAACAAAAAGGAAA AAAGAACTCCAAATTAACAAAATCGTGTATCAAACTTGATCCAAACACACCAAAATTGCAACTG AAGAGTGCATCTAACAATGCAGTCCTACGTTGGAGAGCATTTGTTTCGTTCTTCTAATACAAAA GAAAATTAAATTTATAGGCTTGTCTAGTTCTTAATTGCAAGGACACCCAATCTTGTATAATGGA AAAAGGGGAACATAAATATTTATATCATTTTGCCCATTGAAAAGAGGGATTCTGACTTACAAAG CCAGATTTATGAGTCCAAAATGAAGTACCAAAAATACTTCCCACCCTAGATAAGTCAGAAATCT CATGCACAAGCAGGCACACTAAAAAAGTTGCATGCAATGCAAAGTTGCAAACAACAACACCGCC AAGAAAACAAATTTCTGACCTTTATGACATCACGTGTAAGATCTTTTCCGTTCTGCACACGTAG TGTAATTTTCTTTCCTTTGGCTGGGATTTCACCACCAGGCTTCAACTGATAGAACAAAAAGAAA GCCGTTTTAAGTTCAGAGTTGTCACCAATGTACAACATTTTTTTTCTAAAAGAAATGCATGTAT GACTACGGAAGTCTGGAACTGACCTCTGAGTTGCGATAGCCGCACATGTCGCATGTTGTTGCCA TAACAATAACCTCACGAAAATATGGGATTTCTAACCAAAGGTCAAAGACCAGACACTAGCAAAT ATTAATAATTAGCAGTACAATATCACTAGAGAGTTCTGTACGATTCAAGGATCCAATCAAAACA TGTTACAACTACACTGCGTGACAGCAATTACTGTGGAACCTAGCTCCACTAATCATATGCTACA AACCAGCCAGTAAAAGACATGCATGCTTTGGCCATCAATCCATCATCCAGCACGGTCACACACA AAAAAAATTCCATCAATCCCCATGTTTAGATCATAAAACCATTACGTAAGCCTAAATTGGCTGT ATCTCAGGACACTATAAACCATATTTCCAAGCAATTTGACCGTTACTGCCAATTTTCCAGCATA TTATTTATGCTTTGCACTATGATATACTCCCTAACACATAAAGCATGCAAGTAACCAGCAAGAA CATTCTAAATTAAAGTCCCAAATATTTCTTAGCCCCTCATTTTTTAAGAGGAACATTCTAAATT AAAGTCCCAAATATTTCTTAGCCCCTCATTTTTCAAAGAGGCCAAGATTGATCACAGAATCAAA CAAGCATATAGAAACACTACAGATGACCTATTTGACTATTGCTGATATTATCAACATGTTTTAC TTAAAAACGAACATACTCTATTTCTCTATTCTTAGTTTAAGAGTCCATATGGAAGAAATAGTGA ACAAAAGGTGAAAAGGATACTTGTAGCAAAGAAACGAGTGACACACTCAGTTCCACAGGCCCCA CATGTTGATGGCAAAGTATCAACCTGACCAAGTAAATTTTTGTAAGCATGAATGAACATTAGTC TTGAATAAGGTAATTGCCGTACAACTGAATAAAGCATACCTCTTCTGGTGCTGAATATCTGCAC AGCGCTGCAGCAACTTCATCAGGGTTTCCTTGAGCTATAGCACGGCGACCTGCAACAGCTCCAA CCGAACCGTGGGGCTCCTGCAACACCTCAGAGTTCCCTTCCACAGTTGAAGCATGATTAACAGG CTGATCCCCAGGTTCTTCTGTGGATGGTTCAACAAGAAAACCAAGTGCTGCCTGTTGCTCACGC ATCCTTTCATAGAATCTCACAGATAACAAAGGATCTGATGAAGGTGCATTC

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_007789* osi_circ_017973 						
					
						PMCS
						0.349043978

Conservation Information
Conserved circRNAs	osi_circ_007789* osi_circ_017973
PMCS	0.349043978

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							23222574-23220776(+)
23220767-23222632(-)
23222617-23222632(-)
						
						Potential amino acid sequence
						
							MVQQENQVLPVAHASFHRISQITKDLMKVHSLAYFHN*(+)
MRGNAPSSDPLLSVRFYERMREQQAALGFLVEPSTEEPGDQPVNHASTVEGNSEVLQEPHGSVG
AVAGRRAIAQGNPDEVAAALCRYSAPEEVDTLPSTCGACGTECVTRFFATKIPYFREVIVMATT
CDMCGYRNSELKPGGEIPAKGKKITLRVQNGKDLTRDVIKSDSAGVKVPELELELASGTLGGIV
TTVEGLIVKICEGMHLHQILCYL*(-)
MREQQAALGFLVEPSTEEPGDQPVNHASTVEGNSEVLQEPHGSVGAVAGRRAIAQGNPDEVAAA
LCRYSAPEEVDTLPSTCGACGTECVTRFFATKIPYFREVIVMATTCDMCGYRNSELKPGGEIPA
KGKKITLRVQNGKDLTRDVIKSDSAGVKVPELELELASGTLGGIVTTVEGLIVKICEGMHLHQI
LCYL*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	23222574-23220776(+) 23220767-23222632(-) 23222617-23222632(-)
Potential amino acid sequence	MVQQENQVLPVAHASFHRISQITKDLMKVHSLAYFHN(+) MRGNAPSSDPLLSVRFYERMREQQAALGFLVEPSTEEPGDQPVNHASTVEGNSEVLQEPHGSVG AVAGRRAIAQGNPDEVAAALCRYSAPEEVDTLPSTCGACGTECVTRFFATKIPYFREVIVMATT CDMCGYRNSELKPGGEIPAKGKKITLRVQNGKDLTRDVIKSDSAGVKVPELELELASGTLGGIV TTVEGLIVKICEGMHLHQILCYL(-) MREQQAALGFLVEPSTEEPGDQPVNHASTVEGNSEVLQEPHGSVGAVAGRRAIAQGNPDEVAAA LCRYSAPEEVDTLPSTCGACGTECVTRFFATKIPYFREVIVMATTCDMCGYRNSELKPGGEIPA KGKKITLRVQNGKDLTRDVIKSDSAGVKVPELELELASGTLGGIVTTVEGLIVKICEGMHLHQI LCYL*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Lu et al., 2015

circRNA

Detail information of Os08g0471900_circ_g.2

Address

Any questions?

Supported by