Detail information of AT2G26540_circ_g.1


General Information
CircRNA Name AT2G26540_circ_g.1
ID in PlantcircBase ath_circ_014986
Alias 2:11288119-11288814
Organism Arabidpsis thaliana
Position chr2: 11288119-11288814  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G26540
Parent gene annotation Uroporphyrinogen-III synthase, chloroplastic
Parent gene strand -
Alternative splicing AT2G26540_circ_g.2 AT2G26540_circ_g.3 AT2G26540_circ_g.4
Support reads 1/1
Tissues seedling;flower
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G26540.1:3
AT2G26540.3:3
AT2G26540.2:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACACCAATATCATTGCCTGCTTTTAGAGAAGCCGGGTATAAGACAGAGGACCTTTTGCCAACTT
TCTCTGGAAGCTCCGAAGCCAAGACTTTACCAGTTGcgaactgcagaaggagaagctacagaaa
gaacaggagcagatagtgcctgttgcaggagcaccgtatcaacactctgcaccggaacctagta
atagaaaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 238
Transcript exons: 11288119-11288204,11288372-11288427,11288719-11288814
CGAACTGCAGAAGGAGAAGCTACAGAAAGAACAGGAGCAGATAGTGCCTGTTGCAGGAGCACCG
TATCAACACTCTGCACCGGAACTGTTGTGTATGTATTCAGCCTGACAACTTCAAACCCACGTTT
GGACAACCCTTCCACAATATCATTGCCTGCTTTTAGAGAAGCCGGGTATAAGACAGAGGACCTT
TTGCCAACTTTCTCTGGAAGCTCCGAAGCCAAGACTTTACCAGTTG

Genomic sequence CGAACTGCAGAAGGAGAAGCTACAGAAAGAACAGGAGCAGATAGTGCCTGTTGCAGGAGCACCG
TATCAACACTCTGCACCGGAACCTAGTAATAGAAAAAAAAACAGAAAATGACCATTACAATATC
TTTAAATAAGCACATACCAAGGGCTAAAACATGTGAGCCAATATAAAAATTATGACTAAGCCAA
ATAATATATGCAATGAGTTACTTTTTATAGGGCTTGTCTACTAAGTGTAACGACGGCTTACTGT
TGTGTATGTATTCAGCCTGACAACTTCAAACCCACGTTTGGACAACCCTTCCACTAAGATTCAT
ATGTCGAACAGGAAGCAGAGTAAGCTGGTCAGTCATGGACTTCAAAATCTTAAAAAATACATAC
ATAAACTAAGTTAATTAAGCATATCCAAATCTATTTACTGCATCTCATCAAAGATTTAATAATT
TGATGAAGATCTATACTTCAATCCCACTGCCTAATAAAACTGTACAGGATACGAATTATCTATT
GTATTTTTGTTGTTCAGCGCTAATACTTTTCATCTATGTGGTCAACACAATAAGCTCAACTGAA
TTGAGAAAACCTAACAACACACACCAATATCATTGCCTGCTTTTAGAGAAGCCGGGTATAAGAC
AGAGGACCTTTTGCCAACTTTCTCTGGAAGCTCCGAAGCCAAGACTTTACCAGTTG
Conservation Information
Conserved circRNAs NA
PMCS 0.188459776
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020