Detail information of AT2G26540_circ_g.4


General Information
CircRNA Name AT2G26540_circ_g.4
ID in PlantcircBase ath_circ_014989
Alias NA
Organism Arabidpsis thaliana
Position chr2: 11288846-11289194  JBrowse»
Reference genome TAIR10.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene AT2G26540
Parent gene annotation Uroporphyrinogen-III synthase, chloroplastic
Parent gene strand -
Alternative splicing AT2G26540_circ_g.1 AT2G26540_circ_g.2 AT2G26540_circ_g.3
Support reads 4
Tissues seedlings
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATTCGTAAACTATTAAATGCTTGAAGATGCACAGATTGCAGATATAAAGACTAAAATGGAGTG
TATAGAAGCAGAGTCTAAATAGAAAAGTTATGGAACtgtaacattgtatgtacgacgaccactc
ataaattacctatatttacattggcttgatgaatgcgaagacataaaagaaaatacataaacat
tgatgaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGTAACATTGTATGTACGACGACCACTCATAAATTACCTATATTTACATTGGCTTGATGAATGC
GAAGACATAAAAGAAAATACATAAACATTGATGAGAGAATGCTTCCATCACAAATAATTCATCA
TCTCATAAACGTAAATATGATCTTCGATGCTCTATGATTCATGGAAACAAACAATGACAAGGGT
TATTATGGGTCATATCATCCATAGTCAGACACAAGCATATAAACCAATGATAATGTAAATTCGT
AAACTATTAAATGCTTGAAGATGCACAGATTGCAGATATAAAGACTAAAATGGAGTGTATAGAA
GCAGAGTCTAAATAGAAAAGTTATGGAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.257973096
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Pan et al., 2017