Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Zm00001d046545_circ_g.2 |
ID in PlantcircBase | zma_circ_009981 |
Alias | Zm09circ00044, zma_circ_0002979, ZmciR409 |
Organism | Zea mays |
Position | chr9: 95175075-95175975 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | CIRI2, find_circ |
Parent gene | Zm00001d046545 |
Parent gene annotation |
protein_coding |
Parent gene strand | - |
Alternative splicing | Zm00001d046545_circ_g.1 |
Support reads | NA |
Tissues | leaf, endosperm, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d046545_T006:4 Zm00001d046545_T007:4 Zm00001d046545_T015:4 Zm00001d046545_T012:4 Zm00001d046545_T009:3 Zm00001d046545_T001:4 Zm00001d046545_T003:4 Zm00001d046545_T016:4 Zm00001d046545_T010:4 Zm00001d046545_T018:2 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.207419309 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
95175960-95175627(+) 95175079-95175077(-) 95175266-95175908(-) |
Potential amino acid sequence |
MISSSSIVFFCKDCKSLTLWFSSASKTKLNAKDASKFGNVFPIWFPFSELFTNMLDVSLMFKMI LWNNKL*(+) MEELDIISEKRLELKIIQRKVEKLRSSLECFHNIEGGIGSDSVVRSLSIQLTILLFIQLCKLND IVKRGNKCDIILNYHNLLFQRIILNISDTSSIFVNNSLNGNQIGKTFPNLDASLAFNFVFEAEE NQRVSDLQSLQKKTMEELDIISEKRLELKIIQRKVEKLRSSLECFHNIEGGIGSDSVVRSLSIQ LTILLFIQLCKLNDIVKRGNKCDIILNYHNLLFQRIILNISDTSSIFVNNSLNGNQIGKTFPNL DASLAFNFVFEAEENQRVSDLQSLQKKTMEELDIISEKRLELKIIQRKVEKLRSSLECFHNIEG GIGSDSVVRSLSIQLTILLFIQLCKLNDIVKRGNKCDIILNYHNLLFQRIILNISDTSSIFVNN SLNGNQIGKTFPNLDASLAFNFVFEAEENQRVSDLQSLQKKTM(-) METKLERHFQIWMHLWHSILFSKPRRTKELVIYSPCRRRQWKNLISFLKRGLNSKLFNGRWRN* (-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
---|---|
References | Han et al., 2020; Ma et al., 2021b;Zhang et al., 2019 |