Detail information of BGIOSGA026389_circ_ag.2


General Information
CircRNA Name BGIOSGA026389_circ_ag.2
ID in PlantcircBase osi_circ_017485
Alias Chr07:28816865_28821416(MH63RS2), Chr07:28966463_28971015(ZS97RS2), Chr07:28816865_28821416(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr7: 26716746-26721298  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method CIRI2, CIRCexplorer2, CIRCexplorer2, CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA026389_circ_ag.1 BGIOSGA026389_circ_igg.1 BGIOSGA026390_circ_igg.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCAAATACCGACCTCCCTGCCCCTTCCTCTAGCCTCGCTGAACTTATCGGCAATTTCTCCAGAA
AGGGACTCGACGTAACCGACATGGTTGCTCTCTCAGggagcacacacgatcgggcaggcgcagt
gccagaacttcagggacaggatctacaacgagaccaacatcgattccgccttcgcgacgcaacg
ccaggcca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGAGCACACACGATCGGGCAGGCGCAGTGCCAGAACTTCAGGGACAGGATCTACAACGAGACCA
ACATCGATTCCGCCTTCGCGACGCAACGCCAGGCCAACTGCCCACGGCCGACGGGCAGCGGCGA
CAGCAACCTGGCGGCGCTGGACACGACGACGCCCAACGCCTTCGACAACGCCTACTACAGCAAC
CTGCTGTCGAACAAGGGGCTCCTGCACTCCGACCAGGTGCTCTTCAACGGCGGCAGCGCGGACA
ACACGGTCAGGAACTTCGCGTCCAACGCGGCGGCGTTCAGCAGCGCCTTCACGACGGCCATGGT
GAAGATGGGGAACATCTCGCCGCTGACCGGGACGCAGGGGCAGATCAGGCTCAGCTGCTCCAAG
GTGAACTCCTAATTAAGGAGTAGTATGACGGGATGCGTTCGTTGCTGGAAGCAAATCGTGTCGA
CGACGACATAAACGGGCCACACCACATATACCCATATATGTAGTATAACCACAAGTATAGGTAC
GGTGGTGTTGTACTAGTACACGTAAAGTATATGGCAGCCAGCTCGCTCTAGCAATCCATCAAGT
GTATGGAGCAGAGCAGCCATGGCATTAGCACCTAGTATACCAAAATAAAAGCTCCTCATGCGAA
GGCATGCATGGAGGATCAATGAACTGTTACCTTCACGCACATGTCCGTTCACAACTTCTCCAGA
CTTTTACGGTACATCAAGCTCCCTTTTTTCAAGTAAACAACACTAGATATGTTTTTTCATTAGA
TAGAGAAAAAATAAATACAACCCGCCCCTAGGAGCGAAAAAAAGAAGAAGAAAAAGCCCGTATT
TACAAATTATATACTGATAGGTAATAACTCTCTAAGTCATTTTGTTCCTGCCATAGTCCAAGTC
TTCTTCCTCTATTTTTGCTAGGAGGGTTATTGTCATGCTCTCCTTGTTAGAAATTTTGTTGGTT
CCTCTCCTTCCGTATCTCCTAGACGACAAGGAGAATTAGGGAGCGCAATCCCCGCTTTGGCATA
AATGTCGTGTTTGGCACACACATTGATAGGGGTGGCTAACAAGCCGACTCGGCTCGACTCGTAA
AAACTCATTAAGTTAATGAGCTAGCTTGGCTCGACTCATTAACATAACGAGTTAAAAATGGAAC
TCGACTCGACTCATTAAAAAGTCCGAGTTGACTCATTAAACGTGTTACACCGAAAAACATGGTT
TGAAATTCATATGCAGTATAATTTGTGATTCTATGACAAAAATTATGATTGGCGTGCTATGTAT
CATGACTCATAAGATTGTACTACAATGTATAATTATGAGTATATGACTTTTACACCTGTAAAAT
ATGAACAATTAACTTCTATCTTAGTGTATCATGAGCTTAACGAGCTAATCGAGTAACTCACGAG
CTAGCTCGAGTTGGCTCGTTAAGTAAACGAGTAAAAGTTCAAACTCATTAACTACTCGAGTTAA
GTCGAGCCGAGCCAAGTTTTACACAAGTTGAGCTAGCTCATGAGTTTCGATTTTTTTTCCACCC
CTGCACATCGAGCTCTGTTTCGCTATTGATGTTGGTTGACACGGTGAACTTTGACTCTTTGAGT
ATCAATTATCAAACGGTGTACTCCTACCGTCTTACGTGCCATTGCCATCCCGCGCGGCCGCACC
GTCCCAAACTCCCACCGACGCAAGCAAGCGCCGCCCTTCCGCTTGGGCCGTTTTACGCCCGAAT
GGTCCGAGACCTACCTATTGGGCCTTTGGACCGTGTGACGCCACATTTCGCTCGCAGTGTCTGT
CAGACCAGGGATGGTGGCCCGTGGGCGCTGAGCAGGCCGGCCTTTCATTTAGTTCGTGTCACCT
GTAGGCGGCTAGGCCGGAGGGAAACTAACGTACCCTTTTGTTGTTATTTATAACTTTATCGACT
ATAAATTTTGATAAGCAACAAATCAAACATGCCATAATCAATTAGGCAAAATTAAGTAATGGAA
AAATTAGGAAAAACTAAAGTTATATTCCCTCCTCCTCAAAAAGAATACAATTTTAGATTTTAAA
TTTATTCCAACATATAACGTACTCTATAGTATTGCTTTTTCGTCCAACCACCACTCATTCACCC
ATATATTACTAACCTAGCTACTCCACCATTCCCAACTGTCCCTCATTTGATGAGTGGTCGAGTA
TTTTTCCTATACTATACTAGTTTGTCTTTTAAATATTACAATTGTATTTTTCTTTTTTAGAATT
GAGGTAGTAAATTTGTAAACAAAGTGAACAGGCCACCAACCTACTAGGTGGACCACTGTACACG
ATAATATTATTTGTGCTATTGTGTTTATTTTAATCTAAGTTGCAAATCAAGAGAGTATTTTATT
TCATTCAAAAAGGAATAATTTGTGAAACACTCAGCAACTGTATAATATTAGCCGTGAAACTCGG
TTAACCATAATTTTTTTTCAAAGGAACTATACGATAATTTAATTATTTTACTATCCGCATTTTA
TGGCTTAAGAAACAAGAGTAACATACGGCACATGCAACAACCACCATTCTAGCTAGAGCTAGAA
ATGTCGGCCCAACTTGTGATAGCTAATTACGTTCGATTGGAAAATCATATCACCAACATGCATG
GTTTAATCATGGCAACGCTGATGCGAAAGCTCTCGCAGATCTATTATTTTTTCCCTGGAGATTG
ATCGAAAATGATGGCACAACGGTATGTAATGCTATAACAGCATATATTGTCTTGTAACACACCG
TTTGCACTTAAATTAGACAATTAGTCCGAATGTACATAAGAAGATGAATTGCGATAGACCATTC
TAGCTCGTCACGAGCTGAATAGTTCTCGCACTATTATACCCGAGATCAATTAGCAGAGTATTAA
TAAGGTAAAGTTATTTTCATAAACTCTGTACGACGATAGTGCATACATACCAATCTTTAACAAA
GGGACAAATTATCGACGGCATTTGTATGTTCATGTGCTATTCTATGGCACGGGTGCTCTTTTTT
TTTGGCTTAAGCAACGCGTGATTAATGGTTAACAGATTAAGGTCAAGCGAAATGGACCGAACTG
ACCCTACATTGCATGAATAATGCAGAGTTGATGATGTTGGCCGTAGGCCGTACGTAGAAACTTA
TGTTGGACACACATGTAAGTACTAGTAGTCTAGTAGCACTAATAAAGTTAACTAATAAATTATA
TATGATGTCACTTTAAAAAATACAGATTCAAATTCGATATATTGAAGTTGAACAAATTAAATTC
TAGCTAGTTAGTATGCACACATTCACACTCATATTTGTTTTTGTGTTGTAATTTATAGAAGTTA
AAATTCAACTTGCAATTTGTTAGTAAAAACATAACTATTTAGATGACTAGAAACATATCCTTCT
GTTGTAATGTGCCAGGCTCATATAAGTAGAAATATGCTATTAGAAAATTAGAGATAGTACTCTG
TGCGTGGTGGGAGGAGGGATGAAAAAATGACGAGTTCGATTTTAAGGTAGTAGAGATATGTACA
AAGCAATAGGATATTCCTGTTGAGATTAAAATCCATTCCCCTGCCCAGCTCCCCTCGTATGATT
AATGTACCTGCATATTTCGTCTCATCTCGGCACCAATCGATGGCGTCAAGCCTGTAGCTAAGCT
AGCTATATAATATGCAGCGTGGCACCAGCCTCTCTTGCAAGCCACGGCCAGCGAAAAAGCTTAA
AAAAAACTGCAGTTATTTAGGTAGGATTAAGCATACGCGCACGGCGCATCATATCGCTCACTCT
GCATGGCTTCGGCTTCTTCTGTCAGCTTAATGCTGCTCGTTGCTGCAGCTATGGCCTCAGCCGC
CTCGGCGCAGCTGTCGGCGACGTTCTACGACACGTCGTGCCCAAACGCATTGTCCACCATCAAG
AGCGCAGTGACGGCCGCCGTGAACAGCGAGCCCCGAATGGGAGCCTCGCTGGTCAGGCTGCACT
TCCACGACTGCTTCGTCCAAGCAAGTTTTGATCACCTAATCTAATCAGCTGTACAAGTAGTTCT
CCTTAGACTGTACTTTGAGACAAGGAAATTAATAACAGAGGATGTATCTATGGACTTCACTGAT
GATGCAGGGCTGTGACGCGTCTGTTCTGCTGTCCGGCCAGGAGCAGAATGCAGGCCCGAACGCT
GGGTCACTTCGGGGATTCAACGTCGTCGACAACATCAAGACGCAGGTCGAGGCCATCTGCAGCC
AGACCGTCTCCTGCGCCGACATCCTCGCCGTCGCCGCCCGTGACTCCGTCGTCGCGGTAAGATC
ACGGATGAGATTACTACATGATGCATATATTTCTTGTAGACTGTAGTAGTACGTACTCCTAATC
GCTCTTGGTTTGGTTTGGAATCCTTATATTTGCAGCTCGGAGGGCCGTCGTGGACGGTTCTATT
GGGAAGAAGGGACTCCACCACTGCGAACGAAAGCCAAGCAAATACCGACCTCCCTGCCCCTTCC
TCTAGCCTCGCTGAACTTATCGGCAATTTCTCCAGAAAGGGACTCGACGTAACCGACATGGTTG
CTCTCTCAG
Conservation Information
Conserved circRNAs osa_circ_035304 osa_circ_035305 osa_circ_035307
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021