Detail information of Os07g0677200_circ_ag.3


General Information
CircRNA Name Os07g0677200_circ_ag.3
ID in PlantcircBase osa_circ_035304
Alias Os_ciR60
Organism Oryza sativa
Position chr7: 28674677-28679251  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os07g0676900_circ_ag.1 Os07g0676900_circ_ag.2 Os07g0676900_circ_ag.3 Os07g0677100_circ_g.1 Os07g0677100_circ_ag.1 Os07g0677100_circ_ag.2 Os07g0677200_circ_ag.1 Os07g0677200_circ_ag.2 Os07g0677200_circ_ag.4 Os07g0677300_circ_ag.1 Os07g0677300_circ_ag.2
Support reads 1211/79
Tissues root/shoot, seed
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCAAATACCGACCTCCCTGCCCCTTCCTCTAGCCTCGCTGAACTTATCGGCAATTTCTCCAGAA
AGGGACTCGACGTAACCGACATGGTTGCTCTCTCAGgagcacacacgatcgggcaggcgcagtg
ccagaatttcagggacaggatctacaacgagaccaacatcgattccgccttcgcgacgcaacgc
caggccaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAGCACACACGATCGGGCAGGCGCAGTGCCAGAATTTCAGGGACAGGATCTACAACGAGACCAA
CATCGATTCCGCCTTCGCGACGCAACGCCAGGCCAACTGCCCACGGCCGACGGGCAGCGGCGAC
AGCAACCTGGCGCCGCTGGACACGACGACGCCCAACGCCTTCGACAACGCCTACTACAGCAACC
TGCTGTCCAACAAGGGGCTCCTGCACTCCGACCAGGTGCTCTTCAACGGCGGCAGCGCGGACAA
CACGGTCAGGAACTTCGCGTCCAACGCGGCGGCGTTCAGCAGCGCCTTCACGACGGCCATGGTG
AAGATGGGGAACATCTCGCCGCTGACCGGGACGCAGGGGCAGATCAGGCTCAGCTGCTCCAAGG
TGAACTCCTAATTAAGGAGTAGTATGACGGGATGCGTTCGTTGCTGGAAGCAAATCGTGTCGAC
GACGACATAAACGGGCCACACCACATATACCCATATATGTAGTATAACCACAAGTATAGGTACG
GTGGTGTTGTACTAGTACACGTAAAGTATATGGCAGCCAGCTCGCTCTAGCAATCCATCAAGTG
TATGGAGCAGAGCAGCCATGGCATTAGCACCTAGTATACCAAAATAAAAGCTCCTCATGCGAAG
GCATGCATGGAGGATTAATGAACTGTTACCTTCACACACATGTCCGTTCACAACTTCTCCAGAC
TTTTACGGTACATCAAGCTCCGTTTTTTCAAGTAAACAACACTAGATTATGTTTTTTCATTAGA
TAGAGAAAAAATAAATACAACCTGCCCCTAGGAGCGAAAAAAAGAAGAAGAAAAAGCCCGTCTT
TACAAATTATATACTGATAGGTAATAACTCTCTAAGTCATTTTGTTCCTGCCATAGTCCAAGTC
TTCTTCCTCTATTTTTGCTAGGAGGGTTATTGTCGTGGTCTCCTTGTTAGAAATTTTGTTGGTT
CCTCTCCTTCCGTATCTTCTAGACGACAAGGAGAATTAGGGAGCGCAATCCCCGCTTTGGCATA
AATGTCGTGTTTGGCACACACATTGATAGGGGTGGCTAACAAGCCGACTCGGCTCGACTCGTAA
AAACTCATTAAGTTAATGAGCTAGCTTGGCTCGACTCGTTAACATAACGAGTTAAAAATGGAAC
TCGACTCGACTCATTAAAAAGTCCGAGTTGACTCATTAAACGTGTTACACCAAAAAACATGGTT
TGAAATTCATATGCAATATAATTTGTGATTCTATGACAAAAATTATGATTGGCGTGCTATGTAT
CATGGCTCATAAGATTGTACTACAATGTATAATTATGAGTATATGACTTTTACACCTGTAAAAT
ATGAACAATTAACTTCTATCTTAGTGTATCATGAGCTCAACGAGCTAATCGAGTAACTCACGAG
CTAGCTCGAGTTGGCTCGTTAAGTAAACGAGTAAAAGTTCAAACTCATTAACTACTCGAGTTAA
GTCGAGCCGAGCCGAGTTTTACACAAGTTGAGCTAGCTCGTAAGTTCGATTTTTTTTCCACCCC
TGCACATCGAGCTCTGTTTCGCTATTGATGTTGGTTGACACGGTGAACTTTGACTCTTTGAGTA
TCAATTATCAAACGGTGTACTCCTACCGTCTTACGTGCCATTGCCATCCCGCGCGGCCGCACCG
TCCCAAACTCCCACCGACGCAAGCAAGCGCCGCCCTTCCGCTTGGGCCGTTTTACGCCCGAATG
GTCCGAGACCTACCTATTGGGCCTTTGGACCGTGTGACGCCACATTTCGCTCGCAGTGTCTGTC
AGACCAGGGATGGTGGCCCGTGGGCGCTGAGCAGGCCGGCCTTTCATTTAGTTCGTGTCACCTG
TAGGCGGCTAGGCCGGAGGGAAACTAACGTACACTTTTGTTGTTATTTATAACTTTATCGACTA
TAAATTTTGATAAGCAACAAATCAAACATGCCATAATCAATTAGGCAAAATTCAGTAATTTACC
TTAGCAAAATTTAGTAATGGAAAAATTAGGAAAAACTAAAGTTATATTCCCTCCTCCTCAAAAA
GAATACAATTTTAGATTTTAAATTTATTCCAACATATAACGTACTCTATAGTATTGCTTTTTCG
TCCAACCACCACTCATTCACCCATATATTACTAACCTAGCTACTCCACCATTCCCAACTGTCCC
TCATTTGATGAGTGGTCGAGTATTTTTCCTATACTATACTAGTTTGTCTTTTAAATATTACAAT
TGTATTTTTCTTTTTTAGAATTGAGGTAGTAAATTTGTAAACAAAGTGAACAGGCCACCAACCT
ACTAGGTGGACCACTGTACACGATAATATTATTTGTGCTATTGTGTTTATTTTAATCTAAGTTG
CAAATCAAGAGAGTATTTTATTTCATTCAAAAAGGAATAATTTGTGAAACACTCAGCAACTGTA
TAATATTAGCCGTGAAACTCGGTTAACCATAATTTTTTTTCAAAGGAACTATACGATAATTTAA
TTATTTTACTATCCGCATTTTATGGCTTAAGAAACAAGAGTAACATACGGCACATGCAACAACC
ACCATTCTAGCTAGAGCTAGAAATGTCGGCCCAACTTGTGATAGCTAATTACGTTCGAATGGAA
AATCATATCACCAACATGCATGGTTTAATCATGGCAACGCTGATGCGAAAGCTCTCGCAGATCT
ATTATTTTTTCCCTGGAGATTGATCGAAAATGATGGCACAACGGTATGTAATGCTATAACAGCA
TATATTGTCTTGTAACACACCGTTTGCACTTAAATTAGACAATTAGTCCGAACGTACATAAGAA
GATGAATTGCGATAGACCATTCTAGCTCGTCACGAGCTGAATAGTTCTCGCACTATTATACCCG
AGATCAATTAGCAGAGTATTAATAAGGTAAAGTTATTTTCATAAACTCTGTACGACGATAGTGC
ATACATACCAATCTTTAACAAAGGGACAAATTATCGACGGCATTTGTATGTTCATGTGCTATTC
TATGGCACGGGTGCTCTTTTTTTTTGGCTTAAGCAACGCGTGATTAATGGTTAACAGATTAAGG
TCAAGCGAAATGGACCGAACTGACCCTACATTGCATGAATAATGCAGAGGTGATGATGTTGGCC
GTAGGCCGTACGTAGAAACTTATGTTGGACACACATGTAAGTACTAGTAGTCTAGTAGCACTAA
TAAAGTTAACTAATAAATTATATATGATGTCACTTTAAAAAATACAGATTCAAATTCGATATAT
TGAAGTTGAACAAATTAAATTCTAGCTAGTTAGTATGCACACATTCACACTCATATTTGTTTTT
GTGTTGTAATTTATAGAAGTTAAAATTCAACTTGCAATTTGTTAGTAAAAACATAACTATTTAG
ATGACTAGAAACATATCCTTCTGTTGTAATGTGCCAGGCTCATATAAGTAGAAATATGCTATTA
GAAAATTAGAGATAGTACTCTGTGCGTGGTGGGAGGAGGGATGAAAAAATGACGAGTTCGATTT
TAAGGTAGTAGAGATATGTACAAAGCAATAGGATATTCCTATTGAGATTAAAATACATTCCCCT
GCCCAGCTCCCCTCGTATGATTAATGTACCTGCATATTTCGTCTCATCTCGGCACCAATCGATG
GCGTCAAGCCTGTAGCTAAGCTAGCTATATAAGATGCAGCGTGGCACCAGCCTCTCTTGCAAGC
CACGGCCAGCGAAAAAGCTTAAAAAAAACTGCAGTTATTTAGGTAGGATTAAGCATACGCGCAC
GGCGCATCATATCGCTCACTCTGCATGGCTTCGGCTTCTTCTGTCAGCTTAATGCTGCTCGTGG
CTGCAGCTATGGCCTCAGCCGCCTCGGCGCAGCTGTCGGCGACGTTCTACGACACGTCGTGCCC
AAACGCATTGTCCACCATCAAGAGCGCAGTGACGGCCGCCGTGAACAGCGAGCCCCGAATGGGA
GCCTCGCTGGTCAGGCTGCACTTCCACGACTGCTTCGTCCAAGCAAGTTTTGATCACCTAATCT
AATCAGCTGTACAAGTAGTTCTCCTTAGACTGTACTTTGAGACAAGGAAATTAATAACAGAGGA
TGTATCTATGGACTTCACTGATGATGCAGGGCTGTGACGCGTCTGTTCTGCTGTCCGGCCAGGA
GCAGAATGCAGGCCCGAACGCTGGGTCACTTCGGGGATTCAACGTCGTCGACAACATCAAGACG
CAGGTCGAGGCCATCTGCAGCCAGACCGTCTCCTGCGCCGACATCCTCGCCGTCGCCGCCCGTG
ACTCCGTCGTCGCGGTAAGATCACGGATGAGATTACTACATGATGCATATATTTCTTGTAGACT
GTAGTAGTACGTACTCCTAATCGCTCTTGGTTTGGTTTGGAATCCTTATATTTGCAGCTCGGAG
GGCCGTCGTGGACGGTTCTATTGGGAAGAAGGGACTCCACCACTGCGAACGAAAGCCAAGCAAA
TACCGACCTCCCTGCCCCTTCCTCTAGCCTCGCTGAACTTATCGGCAATTTCTCCAGAAAGGGA
CTCGACGTAACCGACATGGTTGCTCTCTCAG
Conservation Information
Conserved circRNAs osi_circ_017485
PMCS 0.802458078
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017