Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Zm00001d035212_circ_g.4 |
ID in PlantcircBase | zma_circ_008889 |
Alias | Zm06circ00006 |
Organism | Zea mays |
Position | chr6: 10038926-10039731 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d035212 |
Parent gene annotation |
Chloroplast stem-loop binding protein of 41 kDa b chloroplastic |
Parent gene strand | + |
Alternative splicing | Zm00001d035212_circ_g.1 Zm00001d035212_circ_g.2 Zm00001d035212_circ_g.3 Zm00001d035212_circ_g.5 Zm00001d035212_circ_g.6 Zm00001d035212_circ_g.7 Zm00001d035212_circ_g.8 |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d035212_T001:4 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.257578255 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
10039440-10038929(+) 10039078-10039723(-) |
Potential amino acid sequence |
MSRIWQEPSTWCSGTPRRASRSSTSPGPSMSPSTALRGHAQRLEGSLSRSSSTTTPRNSTSERR RPSHSETRT*(+) MYCCRLGKASIMGSTCTASRPGL*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Han et al., 2020 |