Detail information of BGIOSGA033078_circ_g.4


General Information
CircRNA Name BGIOSGA033078_circ_g.4
ID in PlantcircBase osi_circ_008466
Alias Chr10:18472275_18473527(MH63RS2), Chr10:18871479_18872731(ZS97RS2), Chr10:18472275_18473527(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 15377993-15379245  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method CIRI2, CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2
Parent gene BGIOSGA033078
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA033078_circ_g.5 BGIOSGA033078_circ_g.6
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA033078-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTGAGAAATTAACACTTGGTCACCTTTGTGATTTGTACAGAGAAGCTGAGAAGCAGAAATGAT
CAGCTATCCAAGAAAAGTTCTGATGTTGTAAATGAGgtgtgggccagatattcttgtatgtgat
gaagcacatataattaagaacaggagagctgacactacacaagctttgaaacaagtaaggacac
agagaaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGTGGGCCAGATATTCTTGTATGTGATGAAGCACATATAATTAAGAACAGGAGAGCTGACACT
ACACAAGCTTTGAAACAAGTAAGGACACAGAGAAGAATTGCGTTAACTGGATCTCCATTGCAGA
ATAATTTGATGGAATATTACTGTGTAAGGAATTATGCACTCCTACCCTAAACCCTTGCTACTTT
ACCTTCCAGCTACCAACAGTATTTTGATATCTGACTGTAGTACTTTTCTAATGGCTTTTGATTT
TCTGGTTAACAGATGGTTGATTTTGTTAGGGAAGGTTATCTTGGAAGTAGCCATGAGTTCCGTA
ACAGGTAAATTGATGCTCTGATCTCTTTTACTGTGGCAAATTAATATTCTGGACATTTGAATGA
TATGCTTTGCATTATCAGGTTCCAGAACCCCATTGAAAATGGGCAGCACACGAATTCTACATCA
GATGATGTCAAGATCATGAACCAACGGTCACATATTCTGTATGAACAACTGAAGGGATTTGTCC
AGCGAATGGACATGAACGTGGTGAAGAATGATCTACCAGAAAAGAAGGTTTTTGTTGTTACTGT
TAAACTCTCTCAACTACAAAGGAAGCTGTACAGAAGATTCTTGGACGTGAATGGTTTCTCAAGC
AGTGCTGCTTCAGAAAAATCTTTTCAGCGGAGTGGCTTCTTTGCCAAGTACCAAACGTTAGCGC
TGGTGCGACATTTTTGCATCTTTATGTCTTTATTAGATGACATGCCAATGTTCTGTTGTACTAT
CATATTTGTTTACGTTCTTTCTTCTCATGCCCGACAATATGCTTCAAGTGTAGATATGGAACCA
TCCTGGTCTTCTCCAGATGGCTAAACAGAAAGGAAATTTGCGCCAAGAAGATGTCGAGTCCTTT
CTGATGGATGAGAGCTCTAGTGATGATAATATTGAAAATTACTTGCCAAATGGAGGTAATTTAT
TATTCACAGACCTTCCTTTTGAGCTTTGACAACTTGCTTCAGACTTTGGCAAATCTGCACGCTT
TTTTTTTTCTATTTGTAATTAGTAAAATATAATACTCGTATAATTTTATCAGTGTTTGATTGAC
TATTTTTTGGTTCAGAAGTCAGAACCCAAACTTCTGATATATTTCAAATTCTCCTTTTTTTTTT
CTGTGAGAAATTAACACTTGGTCACCTTTGTGATTTGTACAGAGAAGCTGAGAAGCAGAAATGA
TCAGCTATCCAAGAAAAGTTCTGATGTTGTAAATGAG
Conservation Information
Conserved circRNAs osa_circ_007003
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021