Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Zm00001d020727_circ_g.3 |
ID in PlantcircBase | zma_circ_002547 |
Alias | circ1600 |
Organism | Zea mays |
Position | chr7: 130351841-130353308 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRCexplor2 |
Parent gene | Zm00001d020727 |
Parent gene annotation |
ARP protein (REF) |
Parent gene strand | + |
Alternative splicing | Zm00001d020727_circ_ag.1 Zm00001d020727_circ_g.1 Zm00001d020727_circ_g.2 Zm00001d020727_circ_g.4 |
Support reads | 2 |
Tissues | seedling leaves |
Exon boundary | No-Yes |
Splicing signals | GT-TA |
Number of exons covered | Zm00001d020727_T005:5 Zm00001d020727_T017:6 Zm00001d020727_T007:6 Zm00001d020727_T003:5 Zm00001d020727_T022:2 Zm00001d020727_T006:6 Zm00001d020727_T011:6 Zm00001d020727_T008:5 Zm00001d020727_T015:6 Zm00001d020727_T004:6 Zm00001d020727_T010:6 Zm00001d020727_T020:7 Zm00001d020727_T013:6 Zm00001d020727_T002:6 Zm00001d020727_T018:5 Zm00001d020727_T021:5 Zm00001d020727_T016:6 Zm00001d020727_T012:6 Zm00001d020727_T009:6 Zm00001d020727_T014:5 Zm00001d020727_T001:6 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.160171458 |
Functional Information | |
---|---|
Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Chen et al., 2017b |