Plant Circular RNA Database

Detail information of Os02g0702800_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os02g0702800_circ_g.2
					
						ID in PlantcircBase
						osa_circ_016135
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 28968113-28971385  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os02g0702800						
					
						Parent gene annotation
						
							Similar to Syntaxin 22 (AtSYP22) (AtVAM3). (Os02t0702800-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os02g0702800_circ_g.1 Os02g0702800_circ_g.3 Os02g0702800_circ_g.4 Os02g0702800_circ_g.5 Os02g0702800_circ_g.6 						
					
						Support reads
						2
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0702800-01:5

General Information
CircRNA Name	Os02g0702800_circ_g.2
ID in PlantcircBase	osa_circ_016135
Alias	NA
Organism	Oryza sativa
Position	chr2: 28968113-28971385 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os02g0702800
Parent gene annotation	Similar to Syntaxin 22 (AtSYP22) (AtVAM3). (Os02t0702800-01)
Parent gene strand	-
Alternative splicing	Os02g0702800_circ_g.1 Os02g0702800_circ_g.3 Os02g0702800_circ_g.4 Os02g0702800_circ_g.5 Os02g0702800_circ_g.6
Support reads	2
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0702800-01:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ACTAACACTAGTATCGGCGTTCTTGTCTGCCTCAGCAGCTCTCCTGAGCTTCTCCTTCGCATCC
TTTGCCAATTGAAGAATGTTATGACTAGTCTTCTGCcagtgatgaattcgatttctgagtcttg
gacgctttcgcgagttctgtctttgcctctttggttgctgctgcagaattctcaatgtttgtat
cgatttcc

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CAGTGATGAATTCGATTTCTGAGTCTTGGACGCTTTCGCGAGTTCTGTCTTTGCCTCTTTGGTT
GCTGCTGCAGAATTCTCAATGTTTGTATCGATTTCCTCTGTAATAAAAGATGTACGTGTTAACT
AGGAAGCACAGGAACAACACATGATATGTACAGTGCAATGTAAAACTTGCCGATTGTAACTCCT
TGAATATGCACAAGTGTAGCAAGATCCTTAAATGCTTCATGTACTTCACCAATCTGTTGTTGAA
TATCTTGAATAGCTTGCTCCCTTTCCTCAATGATAGCTTCATTGAAAACAATTTCATTATCCAA
TTGCAGCACCTCTTGCCTGAAGAAAAACATGATAACTTAGCAGAGATGTAAGGAAAAGTGATTC
TACCAAATCTTGCATGTCGTATTTTATCACCATGAATATCAATCAAAATAAGATGCAACTCTTT
TTCTTCAGGGTCACATCAAAGACAGCCTTGTCTAGTCAAAATTCTCTCCATCCTTCTCTAATGT
AGAAAAGGCTCTCAGTTCATGCGACAAGCAATCTGTGTGAAGTACCAACATGTGGAAGGCAATC
TGTGTAAAGTACCAACACTGCAATTTACTGTAACTGCCACACAATCTAGGCTCGGTCAAAATAA
TGCATGGCCACTTGGCCTATGTATTCCAGCAGAAGCATTTGATCTAACAGATTTTAGGTGCATG
TACTCTCCCAAAAAGACATAGAAAGTGTGCCAGGTATATAATTCATGAGGTGATATACTGCCCA
TGAGATAAATGACGTGCCACGCGACTTATGTAAGTTCCATGCACCACAGATGAAAACTCAGCCA
CAGGAAGTCACTAAAATTGAATATTTTCTGATGGGATAGAATGAAAAAACATGCGCTATACGAT
TAAAGCTGACCTTCCACCAGTAAGTACTAAATCACTAGTTGAAAAAATAAGCAGAAAAAGAAGA
GCTATGAGAACACTGACCTCTTTGATTCTGCGAGTAGCGCATGCTGTTCAGGAATTTTACCAGA
ATCCCTGGCTTCTATACCACCTGTAGTATAGCTACATCATAGTGACCAAAATTCTCAAAGATAT
TAGAAGATAACCCAGTCAACTCTGCACATGAATACCTTTAGTTTTAAGATAAACCATGTCACTA
AATGAGGTCATCAGGTAAACTGCAAGTAAAACGGATGGTCATGACACTGACAAAGAGAAGGCAA
TGTGTCTTTAAATTAGTTAAATTGTATGTTTTTACAATGCAAAATAATAAGACCCATCTCCATA
CTTCAAAGGAAGAGAAGCTAATGGAGCAATAACATAGGCAAAGTTATATGACCTATTCAAAGAA
AAAAATGCCAATATAAGCTAGGCAGAATCCTAGAAGGTTGCAGCATAAGCAAATGAAATGGATC
ATGATGAACACAGTAACAAACTATGCCAAAAAGTTGTGAGAAGTATTACTTGGCCAATGGTTCA
CATAGGGCTAGTTTGGTTTGAAACCCTATCAAAATACTGGTACCAAACCTTGGGTAAATTTTGG
CACTACCAAATTTTTGATAGCATAGATTTGGCTCCACTCTATTGATTTGGCAAAAATTGGCTCC
AATCCAAAATGCTAACATGCACTATTCAAAACTACCAAAGAATTGGTAGGGCAAAAATTGGCAC
CAAACCAAAATGGCCCATACACAACAGTATCAGATTATTCAACTTTTTTTAAGATAATAGAAAT
GGTTTACATCTCCAGCCTCTGCCGACAATCAGATTATTCAACCAAACTCTTTTATCAAGCAATG
AGGGCAAAGGAATTGGTTATTACTATACTAGTAACTAGCATGGTGGCCCGTGCAGATTGCGGCT
AGCATCTATATTTTATCTCATATAATAGCATATATGTTTTCTCAATTTATTATTAAAATATATT
AAAATGACAACATAATTTTAAATTTTGTACTAACTTTACGAAACTACTAATGTGTAATATTCAT
ATTGTATTTTATATACGTGTTAGTTATTAATTATTTTTAATATCAAATTTTAGTTATTTCTAAA
TTATATTCCTATATGGACTCTAGACTCGTCTTTCAATATTTCTTATTTTTAATTCCAAATTTTC
GTTATCTGTAAATTGTATTTCTATATAGACTCTACGCTCTTCTTCCAATATTATTTATTTTTAA
TTCTGATTTTTTTTTTGTTTCTAATTGTATTTCTATGTGGTCTCTAAACTCATCTTTCAATATT
CTTTAATTTTTTATTTCGAATTTCAGTTACTTCTAAATTGTATTTTTATACGGATTCTAAACTC
TACTTTTAGTTTTATTATGTTTATTCCGAATTTTAGTTAGTTTTAAATTCCTATATGGACTCTA
AACTCATCTTTCAATATTCCTTATTTTTTTTAATTCCGAATTTCTATTATTTCTTAATTGTATT
TCTATATGGACTCTATACTCTTCTTCTAAAATTCTTTTTTTTTTATTCCGAATTTCAGTTATTT
CTAAATTGTATTTCTATATGGACTCTAGTCTCCTCTTCCAATATTCCTTATTTTTTAATTCCGA
ATTTCAAGTATTTCTAAATTGTATTTCCATATGGACTCTGTTTTTCTTTTTCTCCGATTAATAT
GAGAATTTCTAGGCCGTGAGAGCGAACGTGGAGGCTCCTTTTTATATTCCTTTTTATAGATAGA
TAAATAGATAGATTTGTTAGAATCCATGTGGAAGCCACTGATAAGTAACATGTGCATGTAAATT
AACTTCTACACATGGCCATTCGTCGGTATACTATTAAAAACCAATGGCATATCATGGCAGGAAA
ATGAAACAATCAAACAATACAGAGAAAAGTTTGAGATGAATCGAATGAAAAGTGTACAAGCATT
ACTTTGGCTGAGATGTCTGGGGAACAACTGGCTTATATGCCATCTCCCTTTGAATCGCAAGATT
TTGAAGTTTTCCATACTCCTCCATCGTCGTGGCAAAATCCTTGGCAAGCTTCATGTCAGCAACC
CTCTTGTCTGCCTGCACATGATACCCAGATTCCTAATCACTATGGTAGCTAAGTAAACTAAGAG
CAGAAAGATGCATACATGATCACACATATAGTTGGAAACAGTCTTGTCCAAGACAAATTCACTG
GGCTAAAACAAAGGGTATAAATAAACAGTAAATTACTACTAACACTAGTATCGGCGTTCTTGTC
TGCCTCAGCAGCTCTCCTGAGCTTCTCCTTCGCATCCTTTGCCAATTGAAGAATGTTATGACTA
GTCTTCTGC
						
					

			
		

Sequences
Splice junction sequence	ACTAACACTAGTATCGGCGTTCTTGTCTGCCTCAGCAGCTCTCCTGAGCTTCTCCTTCGCATCC TTTGCCAATTGAAGAATGTTATGACTAGTCTTCTGCcagtgatgaattcgatttctgagtcttg gacgctttcgcgagttctgtctttgcctctttggttgctgctgcagaattctcaatgtttgtat cgatttcc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CAGTGATGAATTCGATTTCTGAGTCTTGGACGCTTTCGCGAGTTCTGTCTTTGCCTCTTTGGTT GCTGCTGCAGAATTCTCAATGTTTGTATCGATTTCCTCTGTAATAAAAGATGTACGTGTTAACT AGGAAGCACAGGAACAACACATGATATGTACAGTGCAATGTAAAACTTGCCGATTGTAACTCCT TGAATATGCACAAGTGTAGCAAGATCCTTAAATGCTTCATGTACTTCACCAATCTGTTGTTGAA TATCTTGAATAGCTTGCTCCCTTTCCTCAATGATAGCTTCATTGAAAACAATTTCATTATCCAA TTGCAGCACCTCTTGCCTGAAGAAAAACATGATAACTTAGCAGAGATGTAAGGAAAAGTGATTC TACCAAATCTTGCATGTCGTATTTTATCACCATGAATATCAATCAAAATAAGATGCAACTCTTT TTCTTCAGGGTCACATCAAAGACAGCCTTGTCTAGTCAAAATTCTCTCCATCCTTCTCTAATGT AGAAAAGGCTCTCAGTTCATGCGACAAGCAATCTGTGTGAAGTACCAACATGTGGAAGGCAATC TGTGTAAAGTACCAACACTGCAATTTACTGTAACTGCCACACAATCTAGGCTCGGTCAAAATAA TGCATGGCCACTTGGCCTATGTATTCCAGCAGAAGCATTTGATCTAACAGATTTTAGGTGCATG TACTCTCCCAAAAAGACATAGAAAGTGTGCCAGGTATATAATTCATGAGGTGATATACTGCCCA TGAGATAAATGACGTGCCACGCGACTTATGTAAGTTCCATGCACCACAGATGAAAACTCAGCCA CAGGAAGTCACTAAAATTGAATATTTTCTGATGGGATAGAATGAAAAAACATGCGCTATACGAT TAAAGCTGACCTTCCACCAGTAAGTACTAAATCACTAGTTGAAAAAATAAGCAGAAAAAGAAGA GCTATGAGAACACTGACCTCTTTGATTCTGCGAGTAGCGCATGCTGTTCAGGAATTTTACCAGA ATCCCTGGCTTCTATACCACCTGTAGTATAGCTACATCATAGTGACCAAAATTCTCAAAGATAT TAGAAGATAACCCAGTCAACTCTGCACATGAATACCTTTAGTTTTAAGATAAACCATGTCACTA AATGAGGTCATCAGGTAAACTGCAAGTAAAACGGATGGTCATGACACTGACAAAGAGAAGGCAA TGTGTCTTTAAATTAGTTAAATTGTATGTTTTTACAATGCAAAATAATAAGACCCATCTCCATA CTTCAAAGGAAGAGAAGCTAATGGAGCAATAACATAGGCAAAGTTATATGACCTATTCAAAGAA AAAAATGCCAATATAAGCTAGGCAGAATCCTAGAAGGTTGCAGCATAAGCAAATGAAATGGATC ATGATGAACACAGTAACAAACTATGCCAAAAAGTTGTGAGAAGTATTACTTGGCCAATGGTTCA CATAGGGCTAGTTTGGTTTGAAACCCTATCAAAATACTGGTACCAAACCTTGGGTAAATTTTGG CACTACCAAATTTTTGATAGCATAGATTTGGCTCCACTCTATTGATTTGGCAAAAATTGGCTCC AATCCAAAATGCTAACATGCACTATTCAAAACTACCAAAGAATTGGTAGGGCAAAAATTGGCAC CAAACCAAAATGGCCCATACACAACAGTATCAGATTATTCAACTTTTTTTAAGATAATAGAAAT GGTTTACATCTCCAGCCTCTGCCGACAATCAGATTATTCAACCAAACTCTTTTATCAAGCAATG AGGGCAAAGGAATTGGTTATTACTATACTAGTAACTAGCATGGTGGCCCGTGCAGATTGCGGCT AGCATCTATATTTTATCTCATATAATAGCATATATGTTTTCTCAATTTATTATTAAAATATATT AAAATGACAACATAATTTTAAATTTTGTACTAACTTTACGAAACTACTAATGTGTAATATTCAT ATTGTATTTTATATACGTGTTAGTTATTAATTATTTTTAATATCAAATTTTAGTTATTTCTAAA TTATATTCCTATATGGACTCTAGACTCGTCTTTCAATATTTCTTATTTTTAATTCCAAATTTTC GTTATCTGTAAATTGTATTTCTATATAGACTCTACGCTCTTCTTCCAATATTATTTATTTTTAA TTCTGATTTTTTTTTTGTTTCTAATTGTATTTCTATGTGGTCTCTAAACTCATCTTTCAATATT CTTTAATTTTTTATTTCGAATTTCAGTTACTTCTAAATTGTATTTTTATACGGATTCTAAACTC TACTTTTAGTTTTATTATGTTTATTCCGAATTTTAGTTAGTTTTAAATTCCTATATGGACTCTA AACTCATCTTTCAATATTCCTTATTTTTTTTAATTCCGAATTTCTATTATTTCTTAATTGTATT TCTATATGGACTCTATACTCTTCTTCTAAAATTCTTTTTTTTTTATTCCGAATTTCAGTTATTT CTAAATTGTATTTCTATATGGACTCTAGTCTCCTCTTCCAATATTCCTTATTTTTTAATTCCGA ATTTCAAGTATTTCTAAATTGTATTTCCATATGGACTCTGTTTTTCTTTTTCTCCGATTAATAT GAGAATTTCTAGGCCGTGAGAGCGAACGTGGAGGCTCCTTTTTATATTCCTTTTTATAGATAGA TAAATAGATAGATTTGTTAGAATCCATGTGGAAGCCACTGATAAGTAACATGTGCATGTAAATT AACTTCTACACATGGCCATTCGTCGGTATACTATTAAAAACCAATGGCATATCATGGCAGGAAA ATGAAACAATCAAACAATACAGAGAAAAGTTTGAGATGAATCGAATGAAAAGTGTACAAGCATT ACTTTGGCTGAGATGTCTGGGGAACAACTGGCTTATATGCCATCTCCCTTTGAATCGCAAGATT TTGAAGTTTTCCATACTCCTCCATCGTCGTGGCAAAATCCTTGGCAAGCTTCATGTCAGCAACC CTCTTGTCTGCCTGCACATGATACCCAGATTCCTAATCACTATGGTAGCTAAGTAAACTAAGAG CAGAAAGATGCATACATGATCACACATATAGTTGGAAACAGTCTTGTCCAAGACAAATTCACTG GGCTAAAACAAAGGGTATAAATAAACAGTAAATTACTACTAACACTAGTATCGGCGTTCTTGTC TGCCTCAGCAGCTCTCCTGAGCTTCTCCTTCGCATCCTTTGCCAATTGAAGAATGTTATGACTA GTCTTCTGC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.220940305

Conservation Information
Conserved circRNAs	NA
PMCS	0.220940305

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							28969114-28968296(+)
28971112-28971376(-)
28969116-28971376(-)
						
						Potential amino acid sequence
						
							MLFRNFTRIPGFYTTCSIVWLRCLGNNWLICHLPLNRKILKFSILLHRRGKILGKLHVSNPLVC
TSIGVLVCLSSSPELLLRILCQLKNVMTSLLPVMNSISESWTLSRVLSLPLWLLLQNSQCLYRF
PRL*(+)
MKLAKDFATTMEEYGKLQNLAIQREMAYKPVVPQTSQPNYTTGGIEARDSGKIPEQHALLAESK
RQEVLQLDNEIVFNEAIIEEREQAIQDIQQQIGEVHEAFKDLATLVHIQGVTIEEIDTNIENSA
AATKEAKTELAKASKTQKSNSSLAED*(-)
MRYSQNQRGKRCCNWIMKLFSMKLSLRKGSKLFKIFNNRLVKYMKHLRILLHLCIFKELQSRKS
IQTLRILQQQPKRQRQNSRKRPRLRNRIHHWQKTSHNILQLAKDAKEKLRRAAEADKNADTSAD
KRVADMKLAKDFATTMEEYGKLQNLAIQREMAYKPVVPQTSQPNYTTGGIEARDSGKIPEQHAL
LAESKRQEVLQLDNEIVFNEAIIEEREQAIQDIQQQIGEVHEAFKDLATLVHIQGVTIEEIDTN
IENSAAATKEAKTELAKASKTQKSNSSLAED*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	28969114-28968296(+) 28971112-28971376(-) 28969116-28971376(-)
Potential amino acid sequence	MLFRNFTRIPGFYTTCSIVWLRCLGNNWLICHLPLNRKILKFSILLHRRGKILGKLHVSNPLVC TSIGVLVCLSSSPELLLRILCQLKNVMTSLLPVMNSISESWTLSRVLSLPLWLLLQNSQCLYRF PRL(+) MKLAKDFATTMEEYGKLQNLAIQREMAYKPVVPQTSQPNYTTGGIEARDSGKIPEQHALLAESK RQEVLQLDNEIVFNEAIIEEREQAIQDIQQQIGEVHEAFKDLATLVHIQGVTIEEIDTNIENSA AATKEAKTELAKASKTQKSNSSLAED(-) MRYSQNQRGKRCCNWIMKLFSMKLSLRKGSKLFKIFNNRLVKYMKHLRILLHLCIFKELQSRKS IQTLRILQQQPKRQRQNSRKRPRLRNRIHHWQKTSHNILQLAKDAKEKLRRAAEADKNADTSAD KRVADMKLAKDFATTMEEYGKLQNLAIQREMAYKPVVPQTSQPNYTTGGIEARDSGKIPEQHAL LAESKRQEVLQLDNEIVFNEAIIEEREQAIQDIQQQIGEVHEAFKDLATLVHIQGVTIEEIDTN IENSAAATKEAKTELAKASKTQKSNSSLAED*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os02g0702800_circ_g.2

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