Detail information of Os04g0563700_circ_g.5


General Information
CircRNA Name Os04g0563700_circ_g.5
ID in PlantcircBase osa_circ_024874
Alias NA
Organism Oryza sativa
Position chr4: 28219933-28221295  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder
Parent gene Os04g0563700
Parent gene annotation Cyclin. (Os04t0563700-01)
Parent gene strand -
Alternative splicing Os04g0563700_circ_g.1 Os04g0563700_circ_g.2 Os04g0563700_circ_g.3 Os04g0563700_circ_g.4 Os04g0563700_circ_g.6
Support reads 1
Tissues seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0563700-01:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGGTTTACTCTAGCATCGGCTTCTTGGCGATCGCGGACGGGTGCGGCGGCGCCCCGACGAGGT
TGTTGATGTCCCTGAGCGGCCTCCGGTTCCCCATCTcatttccagaatttgtccttttgtataa
gcccggtcagaaattagcactagatcctcgacgacagggactgcgacttcctcatatttgcaag
caaggagc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATTTCCAGAATTTGTCCTTTTGTATAAGCCCGGTCAGAAATTAGCACTAGATCCTCGACGACA
GGGACTGCGACTTCCTCATATTTGCAAGCAAGGAGCATAGCTGTCACTCCAACTAGCTGCAACT
TCTTCCTTGGCACAACTTGTTTTTCCAAGAATCTGTCTACTATGTTAACAGTAAGAAAGAGAGT
CTCATCCATCAGCTCAAACTTGTGATGGACCTGGCAAGACACCAAATAAGATATCAAATTCAAA
GATTGAATCTACTAAAAGATAAGAATGGTTCTGGGTCTGCATATGCTTCTCTACCTCAATGAGC
CAATCAATCAGAATTGCTCTCATCTTTTCATTTATGTCTCCTTGACTGGACATGTAATCAGGCT
GCACACAACTCATTTCCTGCGTAAAGCCCCATGTTTGCAATGTAGTTAAGACTGTTGCCTGAAG
TATCAGTCTAATTTGAGGATGTCAATCTAACTTATTTATTTTCTATGGAATGACAAATTTTGCT
TATACAAACATATTCACGTATTACACAATCTATAGCAATCAATTCAAGATTACGCAAACAAAAC
GATAAAAAGAAGGTATGCAATGTCTGACACTGAAATGACAAGAGATTACCTCATTTTCTCTATA
GAACTTGTACAACTCTTCGACGTACTCGGTTGCTGCAAGCGGATTCCCTGAGTCGGCACTGTCA
ATGTCCATCATGGACTCATCCTCATCAGTATCATTGCATTCATCCTACAAGTGCCAAATGTAAC
AGTAAGAGAGACCATCGGTTTTACACAGCAAGTCAACTGATCATCACACAGTATGCATACCACG
GCAATATAGTCGTTCGATTCGCACGATTCCACATCGTCGTCAACTGTGCCATCGGGGATGGGGT
TCTTCTGTGGATCAGTGCAGACGACCGCTGCATCAGCCACGGAAACCTGATGGTCAAGCTGTTC
TTTTCGCGTCAAGGAGGCCGCGAAATTCCTGGATCACTCAGAGCGAGCGTACCATCATCAGATC
AAGGCTGCAAGAAACACATCAGAGCGGGCAGCAATGGCGCACACGTCCTAACCTCGTCATAGGC
CGGTGGCTCACCACCAATGCAGGCTTCTGCTCTTCCTTCCCACTCTTCCTGACAAAAGCGAAAA
AACAGACCACAAAGGATTGGGATCTCGATCCAAGAAGCAGCGAAGAAAAAGACACGATCTTTTT
TATCTTTTTTCACGAGATCTCCGAGATTCTCGGCGCGGGGGGAGACGGTGGTTTACTCTAGCAT
CGGCTTCTTGGCGATCGCGGACGGGTGCGGCGGCGCCCCGACGAGGTTGTTGATGTCCCTGAGC
GGCCTCCGGTTCCCCATCT
Conservation Information
Conserved circRNAs NA
PMCS 0.158311598
Functional Information
Coding potential Y
Potential coding position 28221266-28220033(+)
28221295-28221208(-)
Potential amino acid sequence MSLSGLRFPISFPEFVLLYKPGQKLALDPRRQGLRLPHICKQGA*(+)
MGNRRPLRDINNLVGAPPHPSAIAKKPMLEKSGKEEQKPALVVSHRPMTRNFAASLTRKEQLDH
QVSVADAAVVCTDPQKNPIPDGTVDDDVESCESNDYIAVDECNDTDEDESMMDIDSADSGNPLA
ATEYVEELYKFYRENEEMSCVQPDYMSSQGDINEKMRAILIDWLIEVHHKFELMDETLFLTVNI
VDRFLEKQVVPRKKLQLVGVTAMLLACKYEEVAVPVVEDLVLISDRAYTKGQILEMRWGTGGRS
GTSTTSSGRRRTRPRSPRSRC*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017