Plant Circular RNA Database

Detail information of Os12g0527800_circ_g.5

			
						 General Information
					
						CircRNA Name
						Os12g0527800_circ_g.5
					
						ID in PlantcircBase
						osa_circ_011840
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr12: 20809655-20811713  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os12g0527800						
					
						Parent gene annotation
						
							Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os12
t0527800-01);Hypothetical conserved gene. (Os12t0527800-02)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os12g0527800_circ_g.4 Os12g0527800_circ_g.6 Os12g0527800_circ_g.7 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os12t0527800-01:7

General Information
CircRNA Name	Os12g0527800_circ_g.5
ID in PlantcircBase	osa_circ_011840
Alias	NA
Organism	Oryza sativa
Position	chr12: 20809655-20811713 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRCexplorer
Parent gene	Os12g0527800
Parent gene annotation	Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os12 t0527800-01);Hypothetical conserved gene. (Os12t0527800-02)
Parent gene strand	-
Alternative splicing	Os12g0527800_circ_g.4 Os12g0527800_circ_g.6 Os12g0527800_circ_g.7
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os12t0527800-01:7

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TACTACCCTCATTTTCTCCCGAAAAGCATATACGACACATAACCTTGACAGCAGCATTGCCCAC
ATCTTCTTGGCCCCAGTCCTCTTCATCTCCTTCCTCctgggagcattcgccacggcatgctcca
catgtgtactgaaggttttggtccgattgaaattgctggtatttttcctcgctgcacaatacat
gaaatgat

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTGGGAGCATTCGCCACGGCATGCTCCACATGTGTACTGAAGGTTTTGGTCCGATTGAAATTGC
TGGTATTTTTCCTCGCTGCACAATACATGAAATGATGTGATGGTGAGGCAATCGACAGAAGATG
GTACATACATATAGAGAATTGACATATTAAGGCAAGAAGCAGTACATATGGAGGGAAAAAATAT
CAGAGCATCTATTCAAACAAAATAAATTGGGTTCGATAATCATACACACCTGATGCCATCACAC
TCAATATGTACCCACTTTTCACAAACATCACAACAAACCATTGGTATCACTTCAGAATCTCTAT
AAACCTGAAAGGAGGGAACCGAAAGAACAGACAAGCATATAAATAGAAGTTAATAAAATGTAAG
GGCACATTACAGCTTAAATTATACACTCTCGACTCAGCCACAGAAATGAAGTATCAATCAAAAA
GACATTCAGCTATAGAGCATAGAAAGAGAGAAAGGAATACACAATCACTGAAATTGAACAGGAA
ATAACAAATGTCACAGGCCAAAACAAAGTTATGTCACTGGCGAAGCCATCATAGACGTAACTAT
GTCAACAATAAGAAATTCGGAAGGGGTTACCTTCAAGCAAACTGGACAGTAGTTTCCTTTCACA
AATAATCGTCCACAAGCATCACAGCATGTGTAACCCAGAAACCACCTGTATATCCACGTTCATA
ATGTTGCAGAAAAGGCATTAGACAACTGGTGATCATGACTTGCCAAAAAGATAAATAAAATTAT
GATCAATTGTTTGAATCAGTACCTTGTGCTATGGCCACTCCCAGGTACACCAGATCCACAACTG
TGACACCTTGTATGTTTTGGACATAAGTATGGTCCATGGGTAACATTCTGAAACATTACATGTT
GTGCAGTGCTAAGGTATGAGCCATAGATTAAAACAATAGAAAAGGGGGGATGAAGGTGTACCTT
GTGCGACGGTTGCTGACAGTAGCAGTGATAAGCACCATCACACCTTTTACAGAACATTAACTTG
TTGGGATCACCAGGTCGTCGACATACCTGTACGTATGACAAGTAGTTATGGTATAAAAACATTT
GAGATGCTAGTGTAGAATTCAGTGTTATTAGACCTGGACAAGCCCAGCTGTTCCAGGCACCTGA
GCCAGGATGGTCCAGGCAGCAAGACCAGTTAAGCAATTGACCCGGCAAAATTCCAGTTCAACCA
GCAGTTTTTCAATCCATGGTGGACATGTGGCTCCATTTTTCAAAAATGGAATGCAATGCTGGGA
CTCGAATCCCAGATCTCCCACCCATCCATTCATGGTTCAAATGGTGAACTATGTATGATATAGG
ATGATAAATATTGTATGGCACAAGCGGTCCAACCGATGACCCAGAGATTGGACCAGTGACCCCG
CAAACCAACGTCTTGGCCAGATTGACATCAAATCCAAGACTCCAGTCTAGTAACACTGGTAGAA
TTATGGCATGAAAAACAAATGATAATCTACATGAAGAAATGGGGGGAGTGCACTTCGACATTAA
CATGAATGCATGGCCACCATAACAGCTGGTACGTGTATAGGCACTAGATCCCTCAAGTACAGTA
AATGGCCTAACTTTGCAGCCCTTTAACTTGAAGAGGTGAAGTTTCCACAGGAAACAAAGCTTAA
CTTTACTGGATAAGGTACTTCTGGAGGCAAAGAAAAAAAATACAAAGGTGTGAAACACAATTTA
AATATACAGACAACTAACCTCACAACTGCGGCAAGAGGGGCAGACCCATGAGCTCCAATGGAAA
AGATCTAGATGGAACATAAACTTGTCAAAGGCTTATAAAATAAAGTATTCAAAGAGGTAGTAAA
ATGAGACATTTTTTATTACCTCTATGTTCCCCCCAGTTTTTCAAACAACTTCTATGATACTTTT
TGTTGCAGAGTTTGCATGGAAGCATTTTGGCAGCTTTTGTACTACCCTCATTTTCTCCCGAAAA
GCATATACGACACATAACCTTGACAGCAGCATTGCCCACATCTTCTTGGCCCCAGTCCTCTTCA
TCTCCTTCCTC
						
					

			
		

Sequences
Splice junction sequence	TACTACCCTCATTTTCTCCCGAAAAGCATATACGACACATAACCTTGACAGCAGCATTGCCCAC ATCTTCTTGGCCCCAGTCCTCTTCATCTCCTTCCTCctgggagcattcgccacggcatgctcca catgtgtactgaaggttttggtccgattgaaattgctggtatttttcctcgctgcacaatacat gaaatgat
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTGGGAGCATTCGCCACGGCATGCTCCACATGTGTACTGAAGGTTTTGGTCCGATTGAAATTGC TGGTATTTTTCCTCGCTGCACAATACATGAAATGATGTGATGGTGAGGCAATCGACAGAAGATG GTACATACATATAGAGAATTGACATATTAAGGCAAGAAGCAGTACATATGGAGGGAAAAAATAT CAGAGCATCTATTCAAACAAAATAAATTGGGTTCGATAATCATACACACCTGATGCCATCACAC TCAATATGTACCCACTTTTCACAAACATCACAACAAACCATTGGTATCACTTCAGAATCTCTAT AAACCTGAAAGGAGGGAACCGAAAGAACAGACAAGCATATAAATAGAAGTTAATAAAATGTAAG GGCACATTACAGCTTAAATTATACACTCTCGACTCAGCCACAGAAATGAAGTATCAATCAAAAA GACATTCAGCTATAGAGCATAGAAAGAGAGAAAGGAATACACAATCACTGAAATTGAACAGGAA ATAACAAATGTCACAGGCCAAAACAAAGTTATGTCACTGGCGAAGCCATCATAGACGTAACTAT GTCAACAATAAGAAATTCGGAAGGGGTTACCTTCAAGCAAACTGGACAGTAGTTTCCTTTCACA AATAATCGTCCACAAGCATCACAGCATGTGTAACCCAGAAACCACCTGTATATCCACGTTCATA ATGTTGCAGAAAAGGCATTAGACAACTGGTGATCATGACTTGCCAAAAAGATAAATAAAATTAT GATCAATTGTTTGAATCAGTACCTTGTGCTATGGCCACTCCCAGGTACACCAGATCCACAACTG TGACACCTTGTATGTTTTGGACATAAGTATGGTCCATGGGTAACATTCTGAAACATTACATGTT GTGCAGTGCTAAGGTATGAGCCATAGATTAAAACAATAGAAAAGGGGGGATGAAGGTGTACCTT GTGCGACGGTTGCTGACAGTAGCAGTGATAAGCACCATCACACCTTTTACAGAACATTAACTTG TTGGGATCACCAGGTCGTCGACATACCTGTACGTATGACAAGTAGTTATGGTATAAAAACATTT GAGATGCTAGTGTAGAATTCAGTGTTATTAGACCTGGACAAGCCCAGCTGTTCCAGGCACCTGA GCCAGGATGGTCCAGGCAGCAAGACCAGTTAAGCAATTGACCCGGCAAAATTCCAGTTCAACCA GCAGTTTTTCAATCCATGGTGGACATGTGGCTCCATTTTTCAAAAATGGAATGCAATGCTGGGA CTCGAATCCCAGATCTCCCACCCATCCATTCATGGTTCAAATGGTGAACTATGTATGATATAGG ATGATAAATATTGTATGGCACAAGCGGTCCAACCGATGACCCAGAGATTGGACCAGTGACCCCG CAAACCAACGTCTTGGCCAGATTGACATCAAATCCAAGACTCCAGTCTAGTAACACTGGTAGAA TTATGGCATGAAAAACAAATGATAATCTACATGAAGAAATGGGGGGAGTGCACTTCGACATTAA CATGAATGCATGGCCACCATAACAGCTGGTACGTGTATAGGCACTAGATCCCTCAAGTACAGTA AATGGCCTAACTTTGCAGCCCTTTAACTTGAAGAGGTGAAGTTTCCACAGGAAACAAAGCTTAA CTTTACTGGATAAGGTACTTCTGGAGGCAAAGAAAAAAAATACAAAGGTGTGAAACACAATTTA AATATACAGACAACTAACCTCACAACTGCGGCAAGAGGGGCAGACCCATGAGCTCCAATGGAAA AGATCTAGATGGAACATAAACTTGTCAAAGGCTTATAAAATAAAGTATTCAAAGAGGTAGTAAA ATGAGACATTTTTTATTACCTCTATGTTCCCCCCAGTTTTTCAAACAACTTCTATGATACTTTT TGTTGCAGAGTTTGCATGGAAGCATTTTGGCAGCTTTTGTACTACCCTCATTTTCTCCCGAAAA GCATATACGACACATAACCTTGACAGCAGCATTGCCCACATCTTCTTGGCCCCAGTCCTCTTCA TCTCCTTCCTC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.131726825

Conservation Information
Conserved circRNAs	NA
PMCS	0.131726825

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							20811441-20810296(+)
20811655-20809657(-)
20809940-20811553(-)
						
						Potential amino acid sequence
						
							MEKISMFPPVFQTTSMILFVAEFAWKHFGSFCTTLIFSRKAYTTHNLDSSIAHIFLAPVLFISF
LLGAFATACSTCVLKVLVRLKLLVFFLADAITLNMYPLFTNITTNHWYHFRISINLQANWTVVS
FHK*(+)
MCRICFSGENEGSTKAAKMLPCKLCNKKYHRSCLKNWGEHRDLFHWSSWVCPSCRSCEVCRRPG
DPNKLMFCKRCDGAYHCYCQQPSHKNVTHGPYLCPKHTRCHSCGSGVPGSGHSTRWFLGYTCCD
ACGRLFVKGNYCPVCLKVYRDSEVIPMVCCDVCEKWVHIECDGISEEKYQQFQSDQNLQYTCGA
CRGECSQEEGDEEDWGQEDVGNAAVKVMCRICFSGENEGSTKAAKMLPCKLCNKKYHRSCLKNW
GEHRDLFHWSSWVCPSCRSCEVCRRPGDPNKLMFCKRCDGAYHCYCQQPSHKNVTHGPYLCPKH
TRCHSCGSGVPGSGHSTRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSEVIPMVCCDVCEKWV
HIECDGISEEKYQQFQSDQNLQYTCGACRGECSQEEGDEEDWGQEDVGNAAVKVMCRICFSGEN
EGSTKAAKMLPCKLCNKKYHRSCLKNWGEHRDLFHWSSWVCPSCRSCEVCRRPGDPNKLMFCKR
CDGAYHCYCQQPSHKNVTHGPYLCPKHTRCHSCGSGVPGSGHSTRWFLGYTCCDACGRLFVKGN
YCPVCLKVYRDSEVIPMVCCDVCEKWVHIECDGISEEKYQQFQSDQNLQYTCGACRGECSQEEG
DEEDWGQEDVGNAAVKVMCRICFSGENEGSTKAAKMLPCKLCNKKYHRSCLKNWGEHRDLFHWS
SWVCPSCRSCEVCRRPGDPNKLMFCKRCDGAYHCYCQQPSHKNVTHGPYLCPKHTRCHSCGSGV
PGSGHSTRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSEVIPMVCCDVCEKWVHIECDGISEE
KYQQFQSDQNLQYTCGACRGECSQ(-)
MFVKSGYILSVMASARKNTSNFNRTKTFSTHVEHAVANAPRRKEMKRTGAKKMWAMLLSRLCVV
YAFREKMRVVQKLPKCFHANSATKSIIEVV*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	20811441-20810296(+) 20811655-20809657(-) 20809940-20811553(-)
Potential amino acid sequence	MEKISMFPPVFQTTSMILFVAEFAWKHFGSFCTTLIFSRKAYTTHNLDSSIAHIFLAPVLFISF LLGAFATACSTCVLKVLVRLKLLVFFLADAITLNMYPLFTNITTNHWYHFRISINLQANWTVVS FHK(+) MCRICFSGENEGSTKAAKMLPCKLCNKKYHRSCLKNWGEHRDLFHWSSWVCPSCRSCEVCRRPG DPNKLMFCKRCDGAYHCYCQQPSHKNVTHGPYLCPKHTRCHSCGSGVPGSGHSTRWFLGYTCCD ACGRLFVKGNYCPVCLKVYRDSEVIPMVCCDVCEKWVHIECDGISEEKYQQFQSDQNLQYTCGA CRGECSQEEGDEEDWGQEDVGNAAVKVMCRICFSGENEGSTKAAKMLPCKLCNKKYHRSCLKNW GEHRDLFHWSSWVCPSCRSCEVCRRPGDPNKLMFCKRCDGAYHCYCQQPSHKNVTHGPYLCPKH TRCHSCGSGVPGSGHSTRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSEVIPMVCCDVCEKWV HIECDGISEEKYQQFQSDQNLQYTCGACRGECSQEEGDEEDWGQEDVGNAAVKVMCRICFSGEN EGSTKAAKMLPCKLCNKKYHRSCLKNWGEHRDLFHWSSWVCPSCRSCEVCRRPGDPNKLMFCKR CDGAYHCYCQQPSHKNVTHGPYLCPKHTRCHSCGSGVPGSGHSTRWFLGYTCCDACGRLFVKGN YCPVCLKVYRDSEVIPMVCCDVCEKWVHIECDGISEEKYQQFQSDQNLQYTCGACRGECSQEEG DEEDWGQEDVGNAAVKVMCRICFSGENEGSTKAAKMLPCKLCNKKYHRSCLKNWGEHRDLFHWS SWVCPSCRSCEVCRRPGDPNKLMFCKRCDGAYHCYCQQPSHKNVTHGPYLCPKHTRCHSCGSGV PGSGHSTRWFLGYTCCDACGRLFVKGNYCPVCLKVYRDSEVIPMVCCDVCEKWVHIECDGISEE KYQQFQSDQNLQYTCGACRGECSQ(-) MFVKSGYILSVMASARKNTSNFNRTKTFSTHVEHAVANAPRRKEMKRTGAKKMWAMLLSRLCVV YAFREKMRVVQKLPKCFHANSATKSIIEVV(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os12g0527800_circ_g.5

Address

Any questions?

Supported by