Detail information of AT2G03710_circ_g.4


General Information
CircRNA Name AT2G03710_circ_g.4
ID in PlantcircBase ath_circ_012702
Alias 2:1131268-1131440
Organism Arabidpsis thaliana
Position chr2: 1131268-1131440  JBrowse»
Reference genome TAIR10.38
Type   u-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G03710
Parent gene annotation Agamous-like MADS-box protein AGL3
Parent gene strand +
Alternative splicing AT2G03710_circ_g.3
Support reads 1/3
Tissues seedling;flower
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G03710.2:1
AT2G03710.1:1
AT2G03710.3:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGCATGAGCTCTTATCAATCAAACCCTCCAATTCAGGAAGCAGGTTTCTTCAAGCCTCTACAAG
GCAATGTAGCATTGCAAATGAGttggaggacagtgatgcagcacttactcaatcgttttgggga
agttctgctgcagaacaacaacaacaacatcaacaacagcaacaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 173
Transcript exons: 1131268-1131440
TTGGAGGACAGTGATGCAGCACTTACTCAATCGTTTTGGGGAAGTTCTGCTGCAGAACAACAAC
AACAACATCAACAACAGCAACAAGGCATGAGCTCTTATCAATCAAACCCTCCAATTCAGGAAGC
AGGTTTCTTCAAGCCTCTACAAGGCAATGTAGCATTGCAAATGAG

Genomic sequence TTGGAGGACAGTGATGCAGCACTTACTCAATCGTTTTGGGGAAGTTCTGCTGCAGAACAACAAC
AACAACATCAACAACAGCAACAAGGCATGAGCTCTTATCAATCAAACCCTCCAATTCAGGAAGC
AGGTTTCTTCAAGCCTCTACAAGGCAATGTAGCATTGCAAATGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.538048418
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020