Detail information of AT2G03710_circ_g.3


General Information
CircRNA Name AT2G03710_circ_g.3
ID in PlantcircBase ath_circ_012701
Alias 2:1131150-1131440
Organism Arabidpsis thaliana
Position chr2: 1131150-1131440  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G03710
Parent gene annotation Agamous-like MADS-box protein AGL3
Parent gene strand +
Alternative splicing AT2G03710_circ_g.4
Support reads 1/2
Tissues leaf;flower
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G03710.1:2
AT2G03710.2:2
AT2G03710.3:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACAACAGCAACAAGGCATGAGCTCTTATCAATCAAACCCTCCAATTCAGGAAGCAGGTTTCTT
CAAGCCTCTACAAGGCAATGTAGCATTGCAAATGAGgaggaaatgttattggaaaccaatagag
atcttaggagaaaggtagctatcggaatcttttaccgcaagaaactgaaaccatttgtcatttg
aaatcttc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 215
Transcript exons: 1131150-1131191,1131268-1131440
GAGGAAATGTTATTGGAAACCAATAGAGATCTTAGGAGAAAGTTGGAGGACAGTGATGCAGCAC
TTACTCAATCGTTTTGGGGAAGTTCTGCTGCAGAACAACAACAACAACATCAACAACAGCAACA
AGGCATGAGCTCTTATCAATCAAACCCTCCAATTCAGGAAGCAGGTTTCTTCAAGCCTCTACAA
GGCAATGTAGCATTGCAAATGAG

Transcript length: 291
Transcript exons: 1131150-1131440
GAGGAAATGTTATTGGAAACCAATAGAGATCTTAGGAGAAAGGTAGCTATCGGAATCTTTTACC
GCAAGAAACTGAAACCATTTGTCATTTGAAATCTTCCTATTCTTTCTTTCTCAGTTGGAGGACA
GTGATGCAGCACTTACTCAATCGTTTTGGGGAAGTTCTGCTGCAGAACAACAACAACAACATCA
ACAACAGCAACAAGGCATGAGCTCTTATCAATCAAACCCTCCAATTCAGGAAGCAGGTTTCTTC
AAGCCTCTACAAGGCAATGTAGCATTGCAAATGAG

Genomic sequence GAGGAAATGTTATTGGAAACCAATAGAGATCTTAGGAGAAAGGTAGCTATCGGAATCTTTTACC
GCAAGAAACTGAAACCATTTGTCATTTGAAATCTTCCTATTCTTTCTTTCTCAGTTGGAGGACA
GTGATGCAGCACTTACTCAATCGTTTTGGGGAAGTTCTGCTGCAGAACAACAACAACAACATCA
ACAACAGCAACAAGGCATGAGCTCTTATCAATCAAACCCTCCAATTCAGGAAGCAGGTTTCTTC
AAGCCTCTACAAGGCAATGTAGCATTGCAAATGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.33108188
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020