Plant Circular RNA Database

Detail information of Os08g0480100_circ_g.7

			
						 General Information
					
						CircRNA Name
						Os08g0480100_circ_g.7
					
						ID in PlantcircBase
						osa_circ_037366
					
						Alias
						Os_ciR11497
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr8: 23720520-23721510  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							Os08g0480100						
					
						Parent gene annotation
						
							Signal recognition particle receptor, alpha subunit, N-terminal 
domain containing protein. (Os08t0480100-01);Similar to predicte
d protein. (Os08t0480100-02)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os08g0480100_circ_g.6 Os08g0480100_circ_g.8 Os08g0480100_circ_g.9 Os08g0480100_circ_g.10 Os08g0480100_circ_g.11 Os08g0480100_circ_g.12 Os08g0480100_circ_g.13 Os08g0480100_circ_g.14 Os08g0480100_circ_g.15 Os08g0480100_circ_g.16 Os08g0480100_circ_g.17 Os08g0480100_circ_g.18 Os08g0480100_circ_g.19 Os08g0480100_circ_g.20 Os08g0480100_circ_g.21 Os08g0480100_circ_g.22 Os08g0480100_circ_g.23 Os08g0480100_circ_g.24 Os08g0480100_circ_g.25 Os08g0480100_circ_g.26 Os08g0480100_circ_g.27 						
					
						Support reads
						2
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os08t0480100-01:1
Os08t0480100-02:2

General Information
CircRNA Name	Os08g0480100_circ_g.7
ID in PlantcircBase	osa_circ_037366
Alias	Os_ciR11497
Organism	Oryza sativa
Position	chr8: 23720520-23721510 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	find_circ
Parent gene	Os08g0480100
Parent gene annotation	Signal recognition particle receptor, alpha subunit, N-terminal domain containing protein. (Os08t0480100-01);Similar to predicte d protein. (Os08t0480100-02)
Parent gene strand	-
Alternative splicing	Os08g0480100_circ_g.6 Os08g0480100_circ_g.8 Os08g0480100_circ_g.9 Os08g0480100_circ_g.10 Os08g0480100_circ_g.11 Os08g0480100_circ_g.12 Os08g0480100_circ_g.13 Os08g0480100_circ_g.14 Os08g0480100_circ_g.15 Os08g0480100_circ_g.16 Os08g0480100_circ_g.17 Os08g0480100_circ_g.18 Os08g0480100_circ_g.19 Os08g0480100_circ_g.20 Os08g0480100_circ_g.21 Os08g0480100_circ_g.22 Os08g0480100_circ_g.23 Os08g0480100_circ_g.24 Os08g0480100_circ_g.25 Os08g0480100_circ_g.26 Os08g0480100_circ_g.27
Support reads	2
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os08t0480100-01:1 Os08t0480100-02:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							CCCTTGAGGGCGGCGCCGCCGAGCGCCCGGCATGACGACCAGAGGATGAGGCCGCCGCGCGTGA
AGATGAGCAGCTCCTCCAACATCTCGACGGACGAACctcttgaacatcgaggagaaccatcctt
tcttcttttgggaagctccagaattttcctctccatcttcctcttcttcatcactatcactgct
cacgacat

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							NA						
					
						Genomic sequence
						
							CTCTTGAACATCGAGGAGAACCATCCTTTCTTCTTTTGGGAAGCTCCAGAATTTTCCTCTCCAT
CTTCCTCTTCTTCATCACTATCACTGCTCACGACATCATCCTTATCCATCATGCTTTCCCCCTG
CTTGACAACCACCTGGTCTATCACCTCATCCCCTCTCTCATCAGCTGGGTCTGTGAAATCCAGC
TTCTTCTTGTCATCAGGTGTGTCATCCCAAACCCTATTTTTCTTCAAATTCTTCTTTGTGTTAG
CCTTAGAGGTGTTCTTGGCCACATTACTAGCAACCTCATTCTTCTTGTTACCCTTGTTTCTCAT
CTTCTGTAACTTATTTACATCAAAGGCCCCATCGTTGGGGTCTCCGTTCTCCTTTCCTTTAACA
ACAACACTGCGGGCATGAGAATTGTCCTTGAGGCTATTCTCTTGCATCTTGGAATTACCATTTG
GCAAAGTGTGCTCCTTCCCGGAGTCACCATCAGAGTCGTCCTTCCCCGAGTCACCTTTCTTCCT
ACCACCACCAGAGCCCTGAGTGTCGCCACGATTGGTCTTAGTGGTAACCTTGGTGGGCCGGGAA
CCAGTGACCTGTTTATTCTTCTTCATCTCCTCACTGCGAGCCTCAGCCTCGAGGTGGAGCTGGC
GAAAAACCTCATTGAAGGCGTCATCATAGGAGGTGCGCTTGGGATCATAAATCTGTGAGAACTC
CTTACGGACGGCGGCGAGGAGGTCGTCGACGTAAAGGAGGTGGAGCATGCGCTGGTAAACGGCG
ACGAACACGAGGCCGAGGTCATTGTTAAAGGTCCACTTAAGCGCATAGGTGTCCTGGGAGAAGC
TGGCGTCGGCAGAGCGCTCCTCGAGGAGGCAGGAGCGGATGAGGGCGTCGATGGGCGAGCCCTT
GAGGGCGGCGCCGCCGAGCGCCCGGCATGACGACCAGAGGATGAGGCCGCCGCGCGTGAAGATG
AGCAGCTCCTCCAACATCTCGACGGACGAAC

Sequences
Splice junction sequence	CCCTTGAGGGCGGCGCCGCCGAGCGCCCGGCATGACGACCAGAGGATGAGGCCGCCGCGCGTGA AGATGAGCAGCTCCTCCAACATCTCGACGGACGAACctcttgaacatcgaggagaaccatcctt tcttcttttgggaagctccagaattttcctctccatcttcctcttcttcatcactatcactgct cacgacat
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTCTTGAACATCGAGGAGAACCATCCTTTCTTCTTTTGGGAAGCTCCAGAATTTTCCTCTCCAT CTTCCTCTTCTTCATCACTATCACTGCTCACGACATCATCCTTATCCATCATGCTTTCCCCCTG CTTGACAACCACCTGGTCTATCACCTCATCCCCTCTCTCATCAGCTGGGTCTGTGAAATCCAGC TTCTTCTTGTCATCAGGTGTGTCATCCCAAACCCTATTTTTCTTCAAATTCTTCTTTGTGTTAG CCTTAGAGGTGTTCTTGGCCACATTACTAGCAACCTCATTCTTCTTGTTACCCTTGTTTCTCAT CTTCTGTAACTTATTTACATCAAAGGCCCCATCGTTGGGGTCTCCGTTCTCCTTTCCTTTAACA ACAACACTGCGGGCATGAGAATTGTCCTTGAGGCTATTCTCTTGCATCTTGGAATTACCATTTG GCAAAGTGTGCTCCTTCCCGGAGTCACCATCAGAGTCGTCCTTCCCCGAGTCACCTTTCTTCCT ACCACCACCAGAGCCCTGAGTGTCGCCACGATTGGTCTTAGTGGTAACCTTGGTGGGCCGGGAA CCAGTGACCTGTTTATTCTTCTTCATCTCCTCACTGCGAGCCTCAGCCTCGAGGTGGAGCTGGC GAAAAACCTCATTGAAGGCGTCATCATAGGAGGTGCGCTTGGGATCATAAATCTGTGAGAACTC CTTACGGACGGCGGCGAGGAGGTCGTCGACGTAAAGGAGGTGGAGCATGCGCTGGTAAACGGCG ACGAACACGAGGCCGAGGTCATTGTTAAAGGTCCACTTAAGCGCATAGGTGTCCTGGGAGAAGC TGGCGTCGGCAGAGCGCTCCTCGAGGAGGCAGGAGCGGATGAGGGCGTCGATGGGCGAGCCCTT GAGGGCGGCGCCGCCGAGCGCCCGGCATGACGACCAGAGGATGAGGCCGCCGCGCGTGAAGATG AGCAGCTCCTCCAACATCTCGACGGACGAAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.293829852

Conservation Information
Conserved circRNAs	NA
PMCS	0.293829852

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							23721391-23720845(+)
23720600-23721326(-)
23720545-23721120(-)
23721498-23721326(-)
						
					

						Potential amino acid sequence
						
							MRASMGEPLRAAPPSARHDDQRMRPPRVKMSSSSNISTDEPLEHRGEPSFLLLGSSRIFLSIFL
FFITITAHDIILIHHAFPLLDNHLVYHLIPSLISWVCEIQLLLVIRCVIPNPIFLQILLCVSLR
GVLGHITSNLILLVTLVSHLL*(+)
MKKRKMERKILELPKRRKDGSPRCSRGSSVEMLEELLIFTRGGLILWSSCRALGGAALKGSPID
ALIRSCLLEERSADASFSQDTYALKWTFNNDLGLVFVAVYQRMLHLLYVDDLLAAVRKEFSQIY
DPKRTSYDDAFNEVFRQLHLEAEARSEEMKKNKQVTGSRPTKVTTKTNRGDTQGSGGGRKKGDS
GKDDSDGDSGKEHTLPNGNSKMQENSLKDNSHARSVVVKGKENGDPNDGAFDVNKLQKMRNKGN
KKNEVASNVAKNTSKANTKKNLKKNRVWDDTPDDKKKLDFTDPADERGDEVIDQVVVKQGESMM
DKDDVVSSDSDEEEEDGEENSGASQKKKGWFSSMFKRFVRRDVGGAAHLHARRPHPLVVMPGAR
RRRPQGLAHRRPHPLLPPRGALCRRQLLPGHLCA*(-)
MVLLDVQEVRPSRCWRSCSSSRAAASSSGRHAGRSAAPPSRARPSTPSSAPASSRSALPTPASP
RTPMRLSGPLTMTSASCSSPFTSACSTSFTSTTSSPPSVRSSHRFMIPSAPPMMTPSMRFFASS
TSRLRLAVRR*(-)
MLEELLIFTRGGLILWSSCRALGGAALKGSPIDALIRSCLLEERSADASFSQDTYALKWTFNND
LGLVFVAVYQRMLHLLYVDDLLAAVRKEFSQIYDPKRTSYDDAFNEVFRQLHLEAEARSEEMKK
NKQVTGSRPTKVTTKTNRGDTQGSGGGRKKGDSGKDDSDGDSGKEHTLPNGNSKMQENSLKDNS
HARSVVVKGKENGDPNDGAFDVNKLQKMRNKGNKKNEVASNVAKNTSKANTKKNLKKNRVWDDT
PDDKKKLDFTDPADERGDEVIDQVVVKQGESMMDKDDVVSSDSDEEEEDGEENSGASQKKKGWF
SSMFKRFVRRDVGGAAHLHARRPHPLVVMPGARRRRPQGLAHRRPHPLLPPRGALCRRQLLPGH
LCA*(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	23721391-23720845(+) 23720600-23721326(-) 23720545-23721120(-) 23721498-23721326(-)
Potential amino acid sequence	MRASMGEPLRAAPPSARHDDQRMRPPRVKMSSSSNISTDEPLEHRGEPSFLLLGSSRIFLSIFL FFITITAHDIILIHHAFPLLDNHLVYHLIPSLISWVCEIQLLLVIRCVIPNPIFLQILLCVSLR GVLGHITSNLILLVTLVSHLL(+) MKKRKMERKILELPKRRKDGSPRCSRGSSVEMLEELLIFTRGGLILWSSCRALGGAALKGSPID ALIRSCLLEERSADASFSQDTYALKWTFNNDLGLVFVAVYQRMLHLLYVDDLLAAVRKEFSQIY DPKRTSYDDAFNEVFRQLHLEAEARSEEMKKNKQVTGSRPTKVTTKTNRGDTQGSGGGRKKGDS GKDDSDGDSGKEHTLPNGNSKMQENSLKDNSHARSVVVKGKENGDPNDGAFDVNKLQKMRNKGN KKNEVASNVAKNTSKANTKKNLKKNRVWDDTPDDKKKLDFTDPADERGDEVIDQVVVKQGESMM DKDDVVSSDSDEEEEDGEENSGASQKKKGWFSSMFKRFVRRDVGGAAHLHARRPHPLVVMPGAR RRRPQGLAHRRPHPLLPPRGALCRRQLLPGHLCA(-) MVLLDVQEVRPSRCWRSCSSSRAAASSSGRHAGRSAAPPSRARPSTPSSAPASSRSALPTPASP RTPMRLSGPLTMTSASCSSPFTSACSTSFTSTTSSPPSVRSSHRFMIPSAPPMMTPSMRFFASS TSRLRLAVRR(-) MLEELLIFTRGGLILWSSCRALGGAALKGSPIDALIRSCLLEERSADASFSQDTYALKWTFNND LGLVFVAVYQRMLHLLYVDDLLAAVRKEFSQIYDPKRTSYDDAFNEVFRQLHLEAEARSEEMKK NKQVTGSRPTKVTTKTNRGDTQGSGGGRKKGDSGKDDSDGDSGKEHTLPNGNSKMQENSLKDNS HARSVVVKGKENGDPNDGAFDVNKLQKMRNKGNKKNEVASNVAKNTSKANTKKNLKKNRVWDDT PDDKKKLDFTDPADERGDEVIDQVVVKQGESMMDKDDVVSSDSDEEEEDGEENSGASQKKKGWF SSMFKRFVRRDVGGAAHLHARRPHPLVVMPGARRRRPQGLAHRRPHPLLPPRGALCRRQLLPGH LCA(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015

circRNA

Detail information of Os08g0480100_circ_g.7

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