Detail information of Os08g0480100_circ_g.16


General Information
CircRNA Name Os08g0480100_circ_g.16
ID in PlantcircBase osa_circ_037375
Alias Os_ciR11500,
Organism Oryza sativa
Position chr8: 23721034-23721196  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ, CIRI-long
Parent gene Os08g0480100
Parent gene annotation Signal recognition particle receptor, alpha subunit, N-terminal
domain containing protein. (Os08t0480100-01);Similar to predicte
d protein. (Os08t0480100-02)
Parent gene strand -
Alternative splicing Os08g0480100_circ_g.6 Os08g0480100_circ_g.7 Os08g0480100_circ_g.8 Os08g0480100_circ_g.9 Os08g0480100_circ_g.10 Os08g0480100_circ_g.11 Os08g0480100_circ_g.12 Os08g0480100_circ_g.13 Os08g0480100_circ_g.14 Os08g0480100_circ_g.15 Os08g0480100_circ_g.17 Os08g0480100_circ_g.18 Os08g0480100_circ_g.19 Os08g0480100_circ_g.20 Os08g0480100_circ_g.21 Os08g0480100_circ_g.22 Os08g0480100_circ_g.23 Os08g0480100_circ_g.24 Os08g0480100_circ_g.25 Os08g0480100_circ_g.26 Os08g0480100_circ_g.27
Support reads 2
Tissues root, leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os08t0480100-02:1
Os08t0480100-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTCATCTCCTCACTGCGAGCCTCAGCCTCGAGGTGGAGCTGGCGAAAAACCTCATTGAAGGCG
TCATCATAGGAGGTGCGcaccaccagagccctgagtgtcgccacgattggtcttagtggtaacc
ttggtgggccgggaaccagtgacctgtttattctt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 163
Transcript exons: 23721034-23721196
CACCACCAGAGCCCTGAGTGTCGCCACGATTGGTCTTAGTGGTAACCTTGGTGGGCCGGGAACC
AGTGACCTGTTTATTCTTCTTCATCTCCTCACTGCGAGCCTCAGCCTCGAGGTGGAGCTGGCGA
AAAACCTCATTGAAGGCGTCATCATAGGAGGTGCG

Genomic sequence CACCACCAGAGCCCTGAGTGTCGCCACGATTGGTCTTAGTGGTAACCTTGGTGGGCCGGGAACC
AGTGACCTGTTTATTCTTCTTCATCTCCTCACTGCGAGCCTCAGCCTCGAGGTGGAGCTGGCGA
AAAACCTCATTGAAGGCGTCATCATAGGAGGTGCG
Conservation Information
Conserved circRNAs NA
PMCS 0.138547648
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015; this study