Detail information of BGIOSGA027214_circ_g.5


General Information
CircRNA Name BGIOSGA027214_circ_g.5
ID in PlantcircBase osi_circ_017758
Alias Chr08:13192872_13197780(MH63RS2), Chr08:13192872_13197780(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr8: 14187547-14192461  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2
Parent gene BGIOSGA027214
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA027208_circ_igg.1 BGIOSGA027232_circ_ag.1 BGIOSGA027223_circ_ig.1 BGIOSGA027223_circ_ig.2 BGIOSGA027223_circ_ig.3 BGIOSGA028425_circ_g.1 BGIOSGA028425_circ_g.2 BGIOSGA028425_circ_g.3 BGIOSGA028425_circ_igg.1 BGIOSGA027218_circ_g.1 BGIOSGA027218_circ_g.2 BGIOSGA028430_circ_igg.1 BGIOSGA028430_circ_igg.2 BGIOSGA027214_circ_g.1 BGIOSGA027214_circ_g.2 BGIOSGA027214_circ_g.3 BGIOSGA027214_circ_g.4 BGIOSGA027214_circ_g.6 BGIOSGA027214_circ_g.7
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-AA
Number of exons covered BGIOSGA027214-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGATCTTTCAAACCGCAGGCCTTGTACAAGTTGCAGCAAATAGCATTGCAGTTCTTCGTCGCT
GGCCCTTTCAAGCACGCCGACAGCATAAGCACGAACcctgtctccaatccccagtatgtatgta
atgacactgtagccagcacaactttttataaaagtttccaaacattgggcagttataccaaaag
ggccatct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGTCTCCAATCCCCAGTATGTATGTAATGACACTGTAGCCAGCACAACTTTTTATAAAAGTT
TCCAAACATTGGGCAGTTATACCAAAAGGGCCATCTTCATCCGGATTACACTTTTGTAGGTAAC
TTTCTATACTGCCCGTTTTTTGTATAATCTGCAAATAAACAGTAATTTGTTATTAACAATAGAT
ACCTTGCTGGATATGCTTCAACTTAAGTAAAAAAGATAATAAGAGGCAAACGTTAATGATTGAC
AGTTCATACAAATAAAAATTAGCAGCAAAAAAAATTGTAGTTGACAATTTTAATAAACATTCTG
GGAAAGTTCTGATAGGAAAAACAATAATAGTAGTTCATAAAAGAAAACATTCATGAAAATTCAC
ACTGCTATTGTTACTAAGGCAAAACCATGTGACTTCAAAAATTAAAAGCGGTGGAAGTTGGCTG
TGCCAGAAGACCCGATGGCTTGGAGCGCAGATGTGCACTTAGCCCATCAAGGTTCAAGTCCTAG
ACAGTATGCCCATCCAAATTTTAGGACATGAGTCTGTTTAATGGGTATGCGCATGCCGCATGGC
CATGTTCCTTTGAGGCATTGGGTGTCTATGATATTTTCCAGGAGGAAGATTTGCAGCCTGTCTC
TCTCTCTCGCATCCCTTCCTCCAGCTCGGACACTGCTAGAGCTGTCAGATGTCCCTGCATAAGC
ATGAGTCGATAACTCGACATGCTAGATAAGCTTTAGACACATGTGTCCCGGAAACACTAGTGTG
TAGAGGATACACACATCTGTGCCCATGAGGTGGTGTGAGTGTGGTGTGTGTTTGCTGCCCTGTA
TTGATAAATATTCAGAAGGACTTCAGTGTAAAAGAGGGTTATAAAGTCATCCCCACCCCTCCTC
CCAGTTAATCTACAAGTAACATTAACCCTAGGTGGTTCTTGGATAACACAGAATCCATCATAAT
CACCGGATAAAACTAAGAATGGTGGGACCCATATATATGAGCATCTAATCTTCCTCTTCATGTG
CCTTCTTCCTCCTCTCCTCTTCTCTCAAGTGCTGTACCAAGCTTGCCAGTTCCTCTGTAATGCA
TTACCACCTGGTCAAGCATGCCACTTTCAAAGAGCAGCAGCCCTGCAAGCCTAATAGAACCTTG
TTTCCTAGGCCAAGACAGCCTATAAGCACGTGAATGCTCTGCTCCACCGTGTTGCCATTACTGG
CCTAGAACTTACAAGCCTTACTTCTGAGCAGCAGTCATCAACTAGAAACTAATAATACTATTTG
TTATAAAAAGGATTTTCCTATGACATCTAGAAGCCACATACTAGTTTACATGGGATCTATAAAT
TCAACTACACCAAGAAATAATACAAAAGAAGCAGAGGCTGCACGCGTCAGTTTGCCATGCGCCT
TGTGTGTGACCCTGATGCTTGGGTGCAATGAGCAAGGGAGATAGTTGCCGACCTACCATCTAAG
CATGCCATGGGGATGATGAAATCTTAGGGGAGGAAGGACAGAAGAGGTGAAGGGAGACAGGCGA
GCCTAATTCCACATATTGAAAACATTTGACATATGTGTTGCATCAGTTAAAACCCGGTATTGAA
TGGGCATGAGATTAGCGATATACCCACTGTTGGAAGGGATCAAGTACCTACATGTACAGGTGTC
ACAATGGAAAGTTTTGACTACTGTATTTGATAGGACATGAATCTGAATTAGATTTTTTCCCCAT
CAGATTAACAGTTTCCCCATTTCAAATTCAACTAAAGGTATGGATTTGAGCATGTTTTAGGTTT
TTCATCTGAAACATTATATTACACGAATTCAAATTAAATTAAATGCATATATCTGAAAGAGGAC
TTTGTTTAAGTTGTATCTGTTCGAATTTGATGAAATTGAGTAGCTATTCCACTCATATTTATGT
ATTCTTAATGATTAAATTCAATTCATATCTATGTAGTAAATATTAACAGGATAATGGGAACGCC
ACTATCCAATCAGCTGGCACTCCATCTGGTTCCACAGATGGAGGATGATTTCTAGAACTGAACA
ATAGAGTGTCTAAATGGACTTTATCCTATAAGAGAAATGATTCAATTAACATTTAACCCAGGCA
CTGTTAGTGTTTGTGATCCCAACTTTTGCAAATTGTTAATAAGCCAGCACTTCAATCTTCCTTA
CCTGTCCTAAAATATCAATGACTTGTTGGATACAGTTTGAAAGAAGTTACAGTAACAGAACATG
TGGTCTTCTGGAAGGGATTAGTATTTTAACATATACTGGATTTGAGGGACTGCAGTGTGGTTCA
TTGTCACATTATAGAGTGAAAGGAGATGCAGGACATAGTGTTGAAGATGGAAAATTTAAGCTTC
AAAGCTATGCATGCTCTGTAATTACAGTGATTTGTAAAGATGAGGCTACTTATGAAGAAGCTAG
ATTTTGTAGAGATATTATCATGAATTGCTGAATAATAGGGTTACCTTTGCAACAGAAATTGAAG
GAATAAACTCAACCAACCCTTCTTCTAGACCAGTCGCAAGAACTTGATAAGGAGTAAGGTGTAA
GTCTAGATTATCTGACTTGAGCAACCGATCCATCAAAGAGATTATTTGAATAACCTACAAAGCA
TACAGATAAGAATTTGTTCTATAAAACTTAAAATTGTATTTTCCATAGAAATGTTAAAGTACAA
TTGAATCTAGTTACCAACTGATCCTTGCGGAGATTATCTCCCTTCTTGAAAATCATTTTCGATG
TACCCCCATTCACAGTACTAAATGCTATACACAATGGATAATTAGCACTTTTGAATACCAATGA
CTCTTCAGGCACAATTCCGTCAAGGAGGACAGTCGGTGTTAATGGAGATGGAATTGGCTGAAAG
AAATTTAATAGAACATCAGTTAAATGGATAACAACATAATCTGGTACTAGGTCTAGAATTGCTA
CAAATAGCATCTTGATTAAGTGATCATGTCATTGGCTCATTGCTTTGCATAGCAAACAATAGAA
TAACCTAAGTTAGGAGAAGAATCTCACCTCACTGAAGTTTTTAAGCTCACTGAAAATTCCGGAG
AATAACTGTTCTAATATCCTGCCTTTAGTTTGTGCGTCATGTTTGACATTTGATAGTTCCTTCA
TTATAGAACGTAACTGAGCAGTGAGTTCTGCCTGCTCTATCAAACTCTGCCACACTTGAAATCC
ATTTTCCTCCTTATGTACTGACTATTCAGAACATAAATATAGATTATTAGAAACCCAGTTCATG
CCCGAGAATTGTGCAGAGTGAAGAGACTGTGTTCAAAACCCAAAAGGGAAAGAGAAGCATACTC
TCATTATAGCATCTTCAAGCATCTCATATGTACATAGATACCTTCTTGCATGAGAAGGATCATG
AAGCTCAACAACTAAATACCAGCGAAGAAAGCTAGCAAGTTCGTAATTTGACAAAGCTGAAAAC
AGAAAAAAAAGTGATATTAGTATTGATTTTAGTCTTTTGAAGAACATATTTCACCTGCAGTTAA
TTATGGACACAACATGATGATAGAAAATAAAGGTACATAGCCCATCAAACTATCAGATAACAAG
GTGGCAAAATTCTCTGCTAGTAACATAATTTCTAGATGTAAAAGGTTTTGCTAGTTCTGGGTCA
TCTGGAGACGCTTAAAACATTTTACACGTAAATGCACATGCATATGCTCTAGTATCACTTGTTT
CAGCAAGCAATGCCATACCTAGAAATTATATAGAAATCAATCCATTCACTTTTATAAGGCATAT
CATAATTTGACAGTCAACTTTGACCATTGATGTCTGAGTTACAAAAATAAATGAAAAATTGAAA
GAATTTTGAAATATATTTGAATCTGTTAGTATAAATGTTGTGCAAAATGTATAATTTGAATAAT
ATTAGTCAAAATCTATAAGTTTTTGAACTTTTCAAATCAGATTATGCCTTTTAATGCTGATTGG
AGTAAACAATATGCCGTAACAAGCCAAACAAGATAAAGGACTAGAGCAGCACATTATGATCAAG
TTACACCAACATGTAGCCCTTTTTACAACTTCTACGAACTCTCTCTTCTTTTTACGGAAATGTC
CATAGGGCATCCAACCATGCAAAATAATATTATGACTGCACCTATCACAAACGCAGGACCTATT
TTAAAGTTTTATTTTTGTCCAACATTTTTTTTTCTCAAAAACTCAGGAGAGCTGCATTTCATTT
CATTAAGGGGAAGAAAAAACAATACAAAAACACAACACAAAGAAAAAACAAAGTAGGAGTGCCC
GAGCCCTCGTACCGAGACCCATACACACTAGACTACCCAGGGAGCTTAGTTGCCTAGAAGTGTA
CTTTTGTCCAACTTCATGGTGACAAATCTGGAAGTGCACTTGCTTGAATCTTAAGTTCACATAA
AAAGCAGATTGTAATGAAGTAGTGATGACTGATGAAGTCTAACCACCTAAATTAGCATACAACT
TTGTTATGCCCAAACCTAAATAGCGAATCATGTTGGCTAGCACAAAACCAGCATAACATAATAT
AGTTTTTACTATGAAGAAACATCCCCAACTGTTTTTCAGGAAATTCAAAGGAGGTTCTCTGAAA
TTCAGTTCTTAGCAAAACAAGGTAAGGTATATCTGACATTTGCGCCAGATAAATAACTGAAATG
CAAACTTTCACAAACTTACATAGGAATGATGTGCTGATGTAAGTTTGTCCTCAATTATCATTCA
AATGACCACAAAAGGATTTAAATAACAAGAATAAAGAACATACCCCGATTCACAAGGAAGTGTG
CTAGACGAGATCTGTCAGATCTTTCAAACCGCAGGCCTTGTACAAGTTGCAGCAAATAGCATTG
CAGTTCTTCGTCGCTGGCCCTTTCAAGCACGCCGACAGCATAAGCACGAAC
Conservation Information
Conserved circRNAs osa_circ_036654
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021