Detail information of BGIOSGA027214_circ_g.6


General Information
CircRNA Name BGIOSGA027214_circ_g.6
ID in PlantcircBase osi_circ_007657
Alias 8:14187548|14192461
Organism Oryza sativa ssp. indica
Position chr8: 14187548-14192461  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA027214
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA027208_circ_igg.1 BGIOSGA027232_circ_ag.1 BGIOSGA027223_circ_ig.1 BGIOSGA027223_circ_ig.2 BGIOSGA027223_circ_ig.3 BGIOSGA028425_circ_g.1 BGIOSGA028425_circ_g.2 BGIOSGA028425_circ_g.3 BGIOSGA028425_circ_igg.1 BGIOSGA027218_circ_g.1 BGIOSGA027218_circ_g.2 BGIOSGA028430_circ_igg.1 BGIOSGA028430_circ_igg.2 BGIOSGA027214_circ_g.1 BGIOSGA027214_circ_g.2 BGIOSGA027214_circ_g.3 BGIOSGA027214_circ_g.4 BGIOSGA027214_circ_g.5 BGIOSGA027214_circ_g.7
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA027214-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGATCTTTCAAACCGCAGGCCTTGTACAAGTTGCAGCAAATAGCATTGCAGTTCTTCGTCGCT
GGCCCTTTCAAGCACGCCGACAGCATAAGCACGAACctgtctccaatccccagtatgtatgtaa
tgacactgtagccagcacaactttttataaaagtttccaaacattgggcagttataccaaaagg
gccatctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGTCTCCAATCCCCAGTATGTATGTAATGACACTGTAGCCAGCACAACTTTTTATAAAAGTTT
CCAAACATTGGGCAGTTATACCAAAAGGGCCATCTTCATCCGGATTACACTTTTGTAGGTAACT
TTCTATACTGCCCGTTTTTTGTATAATCTGCAAATAAACAGTAATTTGTTATTAACAATAGATA
CCTTGCTGGATATGCTTCAACTTAAGTAAAAAAGATAATAAGAGGCAAACGTTAATGATTGACA
GTTCATACAAATAAAAATTAGCAGCAAAAAAAATTGTAGTTGACAATTTTAATAAACATTCTGG
GAAAGTTCTGATAGGAAAAACAATAATAGTAGTTCATAAAAGAAAACATTCATGAAAATTCACA
CTGCTATTGTTACTAAGGCAAAACCATGTGACTTCAAAAATTAAAAGCGGTGGAAGTTGGCTGT
GCCAGAAGACCCGATGGCTTGGAGCGCAGATGTGCACTTAGCCCATCAAGGTTCAAGTCCTAGA
CAGTATGCCCATCCAAATTTTAGGACATGAGTCTGTTTAATGGGTATGCGCATGCCGCATGGCC
ATGTTCCTTTGAGGCATTGGGTGTCTATGATATTTTCCAGGAGGAAGATTTGCAGCCTGTCTCT
CTCTCTCGCATCCCTTCCTCCAGCTCGGACACTGCTAGAGCTGTCAGATGTCCCTGCATAAGCA
TGAGTCGATAACTCGACATGCTAGATAAGCTTTAGACACATGTGTCCCGGAAACACTAGTGTGT
AGAGGATACACACATCTGTGCCCATGAGGTGGTGTGAGTGTGGTGTGTGTTTGCTGCCCTGTAT
TGATAAATATTCAGAAGGACTTCAGTGTAAAAGAGGGTTATAAAGTCATCCCCACCCCTCCTCC
CAGTTAATCTACAAGTAACATTAACCCTAGGTGGTTCTTGGATAACACAGAATCCATCATAATC
ACCGGATAAAACTAAGAATGGTGGGACCCATATATATGAGCATCTAATCTTCCTCTTCATGTGC
CTTCTTCCTCCTCTCCTCTTCTCTCAAGTGCTGTACCAAGCTTGCCAGTTCCTCTGTAATGCAT
TACCACCTGGTCAAGCATGCCACTTTCAAAGAGCAGCAGCCCTGCAAGCCTAATAGAACCTTGT
TTCCTAGGCCAAGACAGCCTATAAGCACGTGAATGCTCTGCTCCACCGTGTTGCCATTACTGGC
CTAGAACTTACAAGCCTTACTTCTGAGCAGCAGTCATCAACTAGAAACTAATAATACTATTTGT
TATAAAAAGGATTTTCCTATGACATCTAGAAGCCACATACTAGTTTACATGGGATCTATAAATT
CAACTACACCAAGAAATAATACAAAAGAAGCAGAGGCTGCACGCGTCAGTTTGCCATGCGCCTT
GTGTGTGACCCTGATGCTTGGGTGCAATGAGCAAGGGAGATAGTTGCCGACCTACCATCTAAGC
ATGCCATGGGGATGATGAAATCTTAGGGGAGGAAGGACAGAAGAGGTGAAGGGAGACAGGCGAG
CCTAATTCCACATATTGAAAACATTTGACATATGTGTTGCATCAGTTAAAACCCGGTATTGAAT
GGGCATGAGATTAGCGATATACCCACTGTTGGAAGGGATCAAGTACCTACATGTACAGGTGTCA
CAATGGAAAGTTTTGACTACTGTATTTGATAGGACATGAATCTGAATTAGATTTTTTCCCCATC
AGATTAACAGTTTCCCCATTTCAAATTCAACTAAAGGTATGGATTTGAGCATGTTTTAGGTTTT
TCATCTGAAACATTATATTACACGAATTCAAATTAAATTAAATGCATATATCTGAAAGAGGACT
TTGTTTAAGTTGTATCTGTTCGAATTTGATGAAATTGAGTAGCTATTCCACTCATATTTATGTA
TTCTTAATGATTAAATTCAATTCATATCTATGTAGTAAATATTAACAGGATAATGGGAACGCCA
CTATCCAATCAGCTGGCACTCCATCTGGTTCCACAGATGGAGGATGATTTCTAGAACTGAACAA
TAGAGTGTCTAAATGGACTTTATCCTATAAGAGAAATGATTCAATTAACATTTAACCCAGGCAC
TGTTAGTGTTTGTGATCCCAACTTTTGCAAATTGTTAATAAGCCAGCACTTCAATCTTCCTTAC
CTGTCCTAAAATATCAATGACTTGTTGGATACAGTTTGAAAGAAGTTACAGTAACAGAACATGT
GGTCTTCTGGAAGGGATTAGTATTTTAACATATACTGGATTTGAGGGACTGCAGTGTGGTTCAT
TGTCACATTATAGAGTGAAAGGAGATGCAGGACATAGTGTTGAAGATGGAAAATTTAAGCTTCA
AAGCTATGCATGCTCTGTAATTACAGTGATTTGTAAAGATGAGGCTACTTATGAAGAAGCTAGA
TTTTGTAGAGATATTATCATGAATTGCTGAATAATAGGGTTACCTTTGCAACAGAAATTGAAGG
AATAAACTCAACCAACCCTTCTTCTAGACCAGTCGCAAGAACTTGATAAGGAGTAAGGTGTAAG
TCTAGATTATCTGACTTGAGCAACCGATCCATCAAAGAGATTATTTGAATAACCTACAAAGCAT
ACAGATAAGAATTTGTTCTATAAAACTTAAAATTGTATTTTCCATAGAAATGTTAAAGTACAAT
TGAATCTAGTTACCAACTGATCCTTGCGGAGATTATCTCCCTTCTTGAAAATCATTTTCGATGT
ACCCCCATTCACAGTACTAAATGCTATACACAATGGATAATTAGCACTTTTGAATACCAATGAC
TCTTCAGGCACAATTCCGTCAAGGAGGACAGTCGGTGTTAATGGAGATGGAATTGGCTGAAAGA
AATTTAATAGAACATCAGTTAAATGGATAACAACATAATCTGGTACTAGGTCTAGAATTGCTAC
AAATAGCATCTTGATTAAGTGATCATGTCATTGGCTCATTGCTTTGCATAGCAAACAATAGAAT
AACCTAAGTTAGGAGAAGAATCTCACCTCACTGAAGTTTTTAAGCTCACTGAAAATTCCGGAGA
ATAACTGTTCTAATATCCTGCCTTTAGTTTGTGCGTCATGTTTGACATTTGATAGTTCCTTCAT
TATAGAACGTAACTGAGCAGTGAGTTCTGCCTGCTCTATCAAACTCTGCCACACTTGAAATCCA
TTTTCCTCCTTATGTACTGACTATTCAGAACATAAATATAGATTATTAGAAACCCAGTTCATGC
CCGAGAATTGTGCAGAGTGAAGAGACTGTGTTCAAAACCCAAAAGGGAAAGAGAAGCATACTCT
CATTATAGCATCTTCAAGCATCTCATATGTACATAGATACCTTCTTGCATGAGAAGGATCATGA
AGCTCAACAACTAAATACCAGCGAAGAAAGCTAGCAAGTTCGTAATTTGACAAAGCTGAAAACA
GAAAAAAAAGTGATATTAGTATTGATTTTAGTCTTTTGAAGAACATATTTCACCTGCAGTTAAT
TATGGACACAACATGATGATAGAAAATAAAGGTACATAGCCCATCAAACTATCAGATAACAAGG
TGGCAAAATTCTCTGCTAGTAACATAATTTCTAGATGTAAAAGGTTTTGCTAGTTCTGGGTCAT
CTGGAGACGCTTAAAACATTTTACACGTAAATGCACATGCATATGCTCTAGTATCACTTGTTTC
AGCAAGCAATGCCATACCTAGAAATTATATAGAAATCAATCCATTCACTTTTATAAGGCATATC
ATAATTTGACAGTCAACTTTGACCATTGATGTCTGAGTTACAAAAATAAATGAAAAATTGAAAG
AATTTTGAAATATATTTGAATCTGTTAGTATAAATGTTGTGCAAAATGTATAATTTGAATAATA
TTAGTCAAAATCTATAAGTTTTTGAACTTTTCAAATCAGATTATGCCTTTTAATGCTGATTGGA
GTAAACAATATGCCGTAACAAGCCAAACAAGATAAAGGACTAGAGCAGCACATTATGATCAAGT
TACACCAACATGTAGCCCTTTTTACAACTTCTACGAACTCTCTCTTCTTTTTACGGAAATGTCC
ATAGGGCATCCAACCATGCAAAATAATATTATGACTGCACCTATCACAAACGCAGGACCTATTT
TAAAGTTTTATTTTTGTCCAACATTTTTTTTTCTCAAAAACTCAGGAGAGCTGCATTTCATTTC
ATTAAGGGGAAGAAAAAACAATACAAAAACACAACACAAAGAAAAAACAAAGTAGGAGTGCCCG
AGCCCTCGTACCGAGACCCATACACACTAGACTACCCAGGGAGCTTAGTTGCCTAGAAGTGTAC
TTTTGTCCAACTTCATGGTGACAAATCTGGAAGTGCACTTGCTTGAATCTTAAGTTCACATAAA
AAGCAGATTGTAATGAAGTAGTGATGACTGATGAAGTCTAACCACCTAAATTAGCATACAACTT
TGTTATGCCCAAACCTAAATAGCGAATCATGTTGGCTAGCACAAAACCAGCATAACATAATATA
GTTTTTACTATGAAGAAACATCCCCAACTGTTTTTCAGGAAATTCAAAGGAGGTTCTCTGAAAT
TCAGTTCTTAGCAAAACAAGGTAAGGTATATCTGACATTTGCGCCAGATAAATAACTGAAATGC
AAACTTTCACAAACTTACATAGGAATGATGTGCTGATGTAAGTTTGTCCTCAATTATCATTCAA
ATGACCACAAAAGGATTTAAATAACAAGAATAAAGAACATACCCCGATTCACAAGGAAGTGTGC
TAGACGAGATCTGTCAGATCTTTCAAACCGCAGGCCTTGTACAAGTTGCAGCAAATAGCATTGC
AGTTCTTCGTCGCTGGCCCTTTCAAGCACGCCGACAGCATAAGCACGAAC
Conservation Information
Conserved circRNAs osa_circ_036654*
PMCS
Functional Information
Coding potential Y
Potential coding position 14190898-14192349(-)
14187621-14192349(-)
Potential amino acid sequence MLEDAIMRSVHKEENGFQVWQSLIEQAELTAQLRSIMKELSNVKHDAQTKGRILEQLFSGIFSE
LKNFSEPIPSPLTPTVLLDGIVPEESLVFKSANYPLCIAFSTVNGGTSKMIFKKGDNLRKDQLV
IQIISLMDRLLKSDNLDLHLTPYQVLATGLEEGLVEFIPSISVAKIIQKTGSIESYLQKCNPDE
DGPFGITAQCLETFIKSCAGYSVITYILGIGDRFVLMLSACLKGPATKNCNAICCNLYKACGLK
DLTDLV*(-)
MFGNFYKKLCWLQCHYIHTGDWRQVRAYAVGVLERASDEELQCYLLQLVQGLRFERSDRSRLAH
FLVNRALSNYELASFLRWYLVVELHDPSHARRYLCTYEMLEDAIMRSVHKEENGFQVWQSLIEQ
AELTAQLRSIMKELSNVKHDAQTKGRILEQLFSGIFSELKNFSEPIPSPLTPTVLLDGIVPEES
LVFKSANYPLCIAFSTVNGGTSKMIFKKGDNLRKDQLVIQIISLMDRLLKSDNLDLHLTPYQVL
ATGLEEGLVEFIPSISVAKIIQKTGSIESYLQKCNPDEDGPFGITAQCLETFIKSCAGYSVITY
ILGIGDRFVLMLSACLKGPATKNCNAICCNLYKACGLKDLTDLV*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021