Detail information of 2_circ_ig.5


General Information
CircRNA Name 2_circ_ig.5
ID in PlantcircBase ath_circ_013102
Alias NA
Organism Arabidpsis thaliana
Position chr2: 3453064-3453301  JBrowse»
Reference genome TAIR10.38
Type   ig-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 2_circ_ig.4 2_circ_ig.6 2_circ_igg.7
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   TA-CG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTTATAAGACGTGAGAGATACTCTAAAGTCATAACGGGGAAGGCCAGAGACTTCGTTCAAATG
GGGGGAGGTTTTCTCTTCAATAAAATGAAAGGCAGGtacctttacctaattcaccaacgttacc
gaccgcgcaataccaatcgagacctctaagacgaactaaagggatgtctctaagcagccaaggc
caagagca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TACCTTTACCTAATTCACCAACGTTACCGACCGCGCAATACCAATCGAGACCTCTAAGACGAAC
TAAAGGGATGTCTCTAAGCAGCCAAGGCCAAGAGCAAGCAGGAGTGGTCCTATCCGCCCATTCA
TTTTTAAGTGACTTATAAGACGTGAGAGATACTCTAAAGTCATAACGGGGAAGGCCAGAGACTT
CGTTCAAATGGGGGGAGGTTTTCTCTTCAATAAAATGAAAGGCAGG
Conservation Information
Conserved circRNAs NA
PMCS 0.165828606
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017