Detail information of 2_circ_igg.7


General Information
CircRNA Name 2_circ_igg.7
ID in PlantcircBase ath_circ_013104
Alias NA
Organism Arabidpsis thaliana
Position chr2: 3453064-3456057  JBrowse»
Reference genome TAIR10.38
Type   igg-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 2_circ_ig.4 2_circ_ig.5 2_circ_ig.6
Support reads 1
Tissues aerial
Exon boundary   No-No
Splicing signals   AG-CG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATAAATGCTCAATGAGGAAAGATTATGAATTTATTCTTTCATTTCGGCTTAACATCTCTTAATA
ATTGTTTCCCTGTTTTTAATACAAAATTTGAGGTGAtacctttacctaattcaccaacgttacc
gaccgcgcaataccaatcgagacctctaagacgaactaaagggatgtctctaagcagccaaggc
caagagca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TACCTTTACCTAATTCACCAACGTTACCGACCGCGCAATACCAATCGAGACCTCTAAGACGAAC
TAAAGGGATGTCTCTAAGCAGCCAAGGCCAAGAGCAAGCAGGAGTGGTCCTATCCGCCCATTCA
TTTTTAAGTGACTTATAAGACGTGAGAGATACTCTAAAGTCATAACGGGGAAGGCCAGAGACTT
CGTTCAAATGGGGGGAGGTTTTCTCTTCAATAAAATGAAAGGCAGGTATTTTTATACGAAAATT
GAGAATTCAATAATAAATGTTCACTTGAGATTAGGTTCGCGAAGAAGAAGATCACAAATGAGAT
CTTGAGCTTGAAGCTTACTCTCCAGAATCGAAAGATCTCTTATCCCCGAGGCGAGGATGGCTTC
ATAAACTTTTTTTGCCGAAGGAAAGATAGATAAGGGGTTTCATCCATATTTTTCTCCCATTTAC
GTATCACGTTCAGAGATTTTAATTAGTTGTCCGCTCTTTCCGTACCTTTACTTACCGACCAAAT
ACCAAGACTACTTACAACAGGTGGTGAGGATCAGCACACTGCGGGAATCTAAGGAATTGATTGC
TGTGCATCGACCAATCTCAGAAAGGGAACTATAAAAGAAGGTGAAGATGCACCGAGGCATTTAT
GAAGACGCATGGTATGCTGTGGAGAAAGGGGTGAAAGGAGTAGAAGCGGCAGGGCAAGAAAAGG
ATAGTGATAAATGGACAGACGCTGAGAAGAAGAAGTCGAAAGTATAACAGCAAAGCACTGTCAG
CAATCGCAAGTGACACATTCAAGGGTGAATCATCCAAAGATGCTTGGGATATCCTACAGAAGGG
TTGACAAGTGTAAAGAGATCTCGTATTGATATGCTGCTGGCTTCACGGAGGAAAGAGAGACCAT
TGAACAATTCATCTGTGCTTTGCCAATGCTGCTCAAAATGAAAGACAAAGACAAAAGTCAAAAA
GCTTCTGTTCTGTAGCACACTCCCGGCGAAGCAGCCCTTCGCAAGCCATGAATGACATAGATAC
CCTTGCGTTTGATGTTGTTGTAGGTCACCTACAAGCGTATGAAATGGAGACTGAGAAGTCCGAG
AAAAAGCATTGCTGCAGCACACACTAAGACAACAAGAGAGATATTGAAGATTCAATCGGCAGCA
CACTGCTTGCTAGAAACTTTGGCAAAGTAGTAAAGAAGAATGGACAAAGTAGGAAAAACCCTTT
TACACAGAACACAACAACAAATCGTGATCGTGTGTCAAAGAAGGGAGAACAACAGTGTAGGGAT
ATGGCAAAGCTGAGCACTGCCTTTTTTTAGAGAAGAGACTTCAAATGTTTTTAATGCAAAGGTT
GCTTCGCTAGGGGCACACAAAAGCTGAATGTGTGAATACTCCCTTATTGGTTTGCTTGGAGCGA
GAGCGAAACAGACGAGGATGATGATGCAGAGGAAGTCTCTGGATTCGTAGCATTTGTGATAAAG
ATGAGACGCTTCATTCGGACAATTGCTTTGCTAGTGAAACAAATTTGCTGCTTTACTCAAGCCC
ACACCCTCAAGGGGTTACTTCGTCACCTCCGTCAAACCCGCGTCAAAGCCCCTCGTCAAAGACC
TACGTCAAAGTAGGTTGCTTCGCCACCTCCGTCAAACCTCCGTCAAAGGAGGCTGCGGGAGGCT
ACGGGGCTGCGGGAGGCTGCGGGAGGCTACGGGGCTGCGGGAGGCTGCGGGGGCTACTTCGCTG
GGAGTGTGCGCTTATGCTGAAGAAAGAAAGCAGGTCCAGGTTCAAAGCGTAAAACGGTGAAACC
AAAGGCTTCTTCAACTCGAAGAAAAAGCAGGAACGGAAAGAACTTTACTTCCTGGTGAAGCAAT
TTTCAGGATAGAATTCTGCCAGCTTAGGAATCTGAACATAAGCAGTAGAGCGAGGGCATAGATT
ACTCTGGTCATGCCACCCCAGCAATTCCAAGAATTAATGCAAGCAAAGCATAGGAGTGTGATTT
CTCGTTTACCTTCTTTTGCTCTTAGGAATAAAGGTAAAAAGAAAAGCAGTGTGCTGGACAGCAC
CTTTCCTACGTTTGAAAACGAATTGCCGGTACTCCACTTAGACTTCTGCACCTGACCTAGTGGC
TGAAGAAGGATCTCCCTCAAGTGATTTGCTGCTTCCTCCCCGACGTAGGTTTGACGGAGGTATC
AGTCTCGTTGCTAAAGCACCTTCGGACCTCTTTTTTCGTCTATTCTTTGGTTAAAGCTAAAAAT
ATTTCTTTTCATTTTGGATCATTCAGTAGCTCAGACTGGAACTTGAGAGCTATAACCTTTTTTC
CTTAATTTCTTCCGTTGCCGTATCTTGCATATATAAGATCGAGATATCTCTAGTATTCATAATC
CAGGATTTCGCCATACTCTTACACCTTACCCAGATCTTATAACTTATAATAAGATCATCTAGGC
TAGGACGAGGCAGACTACCATCAATAAAAGAGCGCTTCAGTCAACATATACAAAGTCCAGCATA
GTTAGATCCATTAAGAGTTGAGCCAGACCCGGATGATCACCGAAGATAATAAGGGCTAGAAACA
TTATCTGGTGAATCTGAGACAACGAAGCTGCGATCGGCAACACAAACCATTGGAGTGTGCTGGG
GAGGATCTGAGCTGTAGAAACCCTTGATCCACTAGGTAAGGTTACTTCCAGAGCGGAGTATGCT
CAGGTGAAACTGGTGGTGATGCCGATCTCTTCTTTCTCGATTTCTAGTTCCGTTTCGCCATTGT
TGAGGAAAAAAAGTGATCCGAGACTCAACAAATCGAAGAGAAAAGGAAAACTTTGTTGATTCAG
GAACTGTGAAACGGAAAGTCTCACCAGAAAGTAATTGCACTCTCTTTGAAGAGGGTCTTCCCTT
TGTAAGCAAAGGTAATAAATGCTCAATGAGGAAAGATTATGAATTTATTCTTTCATTTCGGCTT
AACATCTCTTAATAATTGTTTCCCTGTTTTTAATACAAAATTTGAGGTGA
Conservation Information
Conserved circRNAs NA
PMCS 0.093481533
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017