Detail information of Zm00001d006382_circ_g.4


General Information
CircRNA Name Zm00001d006382_circ_g.4
ID in PlantcircBase zma_circ_001184
Alias circ510
Organism Zea mays
Position chr2: 206184008-206188315  JBrowse»
Reference genome AGPv4.38
Type   ei-circRNA
Identification method CIRI
Parent gene Zm00001d006382
Parent gene annotation DNA mismatch repair protein MSH4
Parent gene strand +
Alternative splicing Zm00001d006382_circ_g.1 Zm00001d006382_circ_g.2 Zm00001d006382_circ_g.3 Zm00001d006382_circ_g.5 Zm00001d006382_circ_g.6 Zm00001d006382_circ_g.7 Zm00001d006382_circ_g.8 Zm00001d006382_circ_g.9 Zm00001d006382_circ_g.10 Zm00001d006382_circ_g.11 Zm00001d006382_circ_g.12
Support reads 3
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered Zm00001d006382_T003:6
Zm00001d006382_T006:6
Zm00001d006382_T005:6
Zm00001d006382_T002:6
Zm00001d006382_T004:6
Zm00001d006382_T010:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAGCTGTAATATGCTAACCAGTATTTCTGAATTCTTAATGATAAGTTAGGTTGTTAGACATGGG
AAGAATCTCCATTGCTCAAGCTTGGAACTTGCTTCAggatgagctaatgagcaatgaggagctg
ttttttggtttgactcaaggtctacggaaatttccaaaagaatcaggtaataaaatgctctctg
gttattct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGATGAGCTAATGAGCAATGAGGAGCTGTTTTTTGGTTTGACTCAAGGTCTACGGAAATTTCCA
AAAGAATCAGGTAATAAAATGCTCTCTGGTTATTCTGCTCTGTAAATAAATACGGCTCTCACTT
CTCACTATCACAAAAAATCCTATACTCTTGTTGCTATACACTAGATAAGGTTCTCTGTCATTTC
TGCTTCAAGCCCAAAAAGGTCACAGATAAGGTATTGAAGCCTGCCAATGGTAGAAAGAGCCAGA
TGTTGATTTCTGATATTATTGTCCTTAAAACTGCTCTGGACGCCATACCATTCTTATCGAAGGT
CTAATAAACCATTTCATTTTCCTTCTGTAAAACAATGCACATCATCACTGGAATTGTAACTAGT
TATCAATGTGTTTAATGTGTACTCTTTCCATCATTCAGGTTTTGAAGGGGGCAAAGAGTTTTCT
TCTTCACAACATCTATCAGACTGTATGTGAAAACCCTAAGTATGCTAATATGAGAAAGAGGTAG
TTTTATGTGACCTCCTACTTCAAAGAGAGTTTTATGATCTTTCCAATCCACAGAATATGTAGGG
ACTATCATCCGGTAGCACTATGATAAGTAAATTACACGATAAGATTTGGTTCCCTTCATAATTT
CATAAATCCTTCTCGTCAACTTTACAATGGAAAACAAATTTGGAGTGTTACTGAATGAATAAGA
AAAGAACAATAAATTTCATTAATATATCTTACCATGTTCCCTCCAAGTATCAATGATTAAAGCA
AGAGCTCTTTATGGATTAAACTAAATTTCAAAACAAGATATTTTTCTAGCCCGTTCCAAATTCT
GCTTGTACTTTTTTCTTTTTTATCTCGAATGCGCAGGAGAGCTGTGCATCATTATATTAAGAAG
AAAAGGAAGATACAAAATAGACCAATACAAGATACAAAAACCACCTTACGGTGGCCAGAAAAGA
CCATACAAAAAGACATCCATAGGAAACAGACTACTAAAACAACCCTCGCAAAGCTCAAACTGAG
TAGATCCCATAAAAGGCTCATAGGCTGCCTTGGCTGAGTATTTACCATTGTTTGCCATCTTGAA
AATGTGATTATCCTCTTTCTCTGGCTGCAGCTCCACTGATCGCAAGGCATCCCAAAGATTAAGG
ATCTCAGCTATAACTCCAACAGATAAACTACCCTGGATATCTGAAATCCATCTCCTGTCCATAA
GGGCCTCTTGCACGTTTCTGCTATTAGCAATGCGTCTAGGAACCACCTCAAACAACCTTGGTGC
CAGGTCCTTAACACATCTACTATGCAGCCATCGGTCCTTCCAAAACAAGGTTGATGCACCATTC
CCAATTTCTGTCACCATAGCTATAGAAAAGAAGGCCTTGACTTCATCACAAAACTACAATGGAA
CAGAAGACCAAGGTCTCACAGGGTGTCAGGGTCAGTCTTGGCCATCCATAACCACCTCATTCGA
AGGACCCATCCCAGCTCCTTTAAGCTAAAAATACCCAGCCCTCCAAACTCCACCGTCCGACAAA
CTTTCCCCCAAGCCACCATAACAGTGCCCTCCTTTAGCCTCTTCTCTTCCATGCCAAAAAAAAC
CTTTTTTGATTTTATCAATAGCCTTTAGTGCCCATGCTGGCAAATCGACAACCATTGCCAAATA
AATCATCATTTCTGTTAACACGAATTGTACTTGAACTATGCGCCCCGTCCTTGTCATCAAATCC
GCCTTCCATCTAGGAAGCTGATTTGCAATCTTGTCGATGATTTGTTGCACTTTGGCTCTTCGAA
AGTTTTGTCAGGGATAGAGGCAAGCCCAAGTAAGTACAAGGAAAAGCAAATAACTCACAAGGGA
GCTGCTCATTCAGAATTGCAATGTCTTGTTTATCACATTGCAAAATCAGTTATGTTTGTTAGTC
AACCATAATGATTACTTTCGAAGATTGTTTGATAGTGTTTATATGGGGTAGGTCACAAGATTGA
AAGCTGAAGGTAAATGCACGAGAGACATGAGGATTTAGAGATTCAGGCTCTAAATGTGAGATAA
TACACACAGGTTCAGGTTCTGTGTGTGGTGGATTCTTGTGATGTATGTTCCCATACGATGTCCT
AATGGAGTTTTTCTGCCCCCTTTTATATTCCAAGGAGGGACGATAGTACATGGTAGGCACCGAG
TCGATTACTTGGTGACGTAACCGAGTCAATACCGAGTTGTATACGAGTTGAACTCTATTTGCAA
GCGTGTCTTCTTTATCTGTTGAAATCATTGTCATATCTCTTATTCTGATGATATCTTTATCATA
TATGCATTTTTAGAATTCTCCTAGTTCTGGAATCCCTCCCGGACTTGATTGTTGAGTTCTTGGG
CTCATAGCCGAGCCCATGAGCCCTTCTGTTCAGGTTCTTTTTCATAAAGTTTGATCTGGGTACT
TATGTCATATATTATTGACAGTAGCTCCTCAGTCTTTAGGCAAATAAAACTCTTGTGAATCTTC
TGGCTGCTTCCCAGCAGACACCGGTGACAGTAGAGGGGCGCTAGGTCAAGCGCCTATCCTAGGC
GGAGATGCAGGAGCGACGCCGCCTAGGCCTCTGCTCCAATTACAACGAGAAGTTCGGGCGCGGC
CACAACCGTGTCTGCCAACGAATCTTCCTCCTCGACTTGGCGCTCGAGGACGACGAGAGGGACT
CCGAGGCAGACGAGACGACCACCAATAAGCCGCAGATCTCGGTCCATGTGATCACCAACATCCG
TACTAGCGAAACGATGCAAGTGTGCATCCAACTCGGCGGCGCCTCCCTCCTCGCCCTCCTCGAC
TCCGGCTCCACCCACAACTTCGTCATCGAGGAGGTAGCCTCCCGCATCTCGCTCGAGCTTCGAC
CCGGGGCAAACTGTAGGCTACGGTGGTGAACGACGACCACGTACCTTGCCCGGGCGTGTACCGC
GGCGCGATCAACGACAAGGCGTTCTCCTCGGACTTTTTTGCCCCGCCCCTCACTGGCTACGATG
TGGTCCTAGGAACACAGTGACTCGTGTCTCTGGGACCCCATCTTGTGGGACTTCGGCGCCCTCA
CCATGTCCTGGCGCGGGGATCATGTGTGCTGGTGTGGCCGAGGCCGACCCTCCTAGTTTAGCAC
TCGGGCATTCACCGTCGACAACCTCCTGACAGCCCTACTCGACGCGTTCGCCGCAACCTTTATC
GAGCCCAAGGGCATGCTGCCACCACGCTCTAGCGACCACGACATGAAAGCTACTTCCAGGGTCG
ACACCTGTGCCAGTCCACCCCTACTGATACCCTGTCGCGCACAAGGACGAGCTGGAATGGAATG
TCAGTGCGCCGCCATGCTTAAGCAGGGCATCATCCGCAAGAGTTCTTTGGCGTTCTCTCCTATG
CTGATCGTGCGGAAGGCTGATGGCACCTGGCATTTCCGCGTCAACTATCGCGCCCTGAACACAA
TAACGGTCAAGGATGCATACCTGATTCCCGTGGTCGACGAACTACTCGATGAGCTCCATGACAC
CCGGTTCTTCTCCATGCTAGATCTTCGCTCCGGCTACCATCAGGTCTAGATGCGCGCTGAGGAC
ATTGCTAAGACCCGCGTTCCGCACACACGACAACCTCTACGAGTTCCTGGTCATGCCGTTCGGG
TTGTGCAACGCCCCGGAATGTCCAGGTGCTCATAATCATTGCTACTCAGTCATGTATTCCAGAA
TGCCTATATTTCAGTGTTTGGTAACCACAGTTATATTCCTTGGTATTGCTTATAATCTTTGCTA
CTCAGTCATGTACATATTATTAATGTTCTTTTGTTTCCTTTTGGTGGCCCTAGAATTGGAGATG
TCATTGACGAGGATGTGGTTCATTCAAGGGCTCCATTTGTAGCCTGCACTCAACAATGTTTTGC
TGTTAAGGCAGGAATTGATGGTCTGCTTGATGTTGCTCGTCGATCTTTCTGTGATACCAGTGAA
GGTAATGCTGCTTATGTACATCATTCTAATTCATGATATTCACATTCTTAACAAACTGTATTGC
AGCCATACATAACCTCGCCAAAAAGTACAGGGATGATTATAATATGCCAAATTTGAAGATAACC
TATAATATTAGGCAAGGATTTTACTTTATTATTCCCCAAAAGGACATCACCGATAGGCTTCCTA
ATAAATTTATCCAGGTAACATGAACATGATCTTACAAAATCAGCTTGTTAGCTGTAATATGCTA
ACCAGTATTTCTGAATTCTTAATGATAAGTTAGGTTGTTAGACATGGGAAGAATCTCCATTGCT
CAAGCTTGGAACTTGCTTCA
Conservation Information
Conserved circRNAs NA
PMCS 0.047553343
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b