Detail information of 3_circ_igg.5


General Information
CircRNA Name 3_circ_igg.5
ID in PlantcircBase ath_circ_022017
Alias NA
Organism Arabidpsis thaliana
Position chr3: 5399047-5402657  JBrowse»
Reference genome TAIR10.38
Type   igg-circRNA
Identification method PcircRNA_finder
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AT3G15950_circ_g.1 AT3G15950_circ_g.2 AT3G15950_circ_g.3 AT3G15950_circ_g.4 AT3G15950_circ_g.6 AT3G15950_circ_g.7 AT3G15950_circ_g.8 AT3G15950_circ_g.9 AT3G15950_circ_g.10 AT3G15950_circ_g.11 AT3G15950_circ_g.12 AT3G15950_circ_g.13 AT3G15950_circ_g.14 AT3G15950_circ_g.15 AT3G15950_circ_g.16 AT3G15950_circ_g.17 AT3G15950_circ_g.18 AT3G15950_circ_g.19 AT3G15950_circ_g.20 AT3G15950_circ_g.21 AT3G15950_circ_g.22 AT3G15950_circ_g.23 AT3G15950_circ_g.24 AT3G15950_circ_g.25 AT3G15950_circ_g.26 AT3G15950_circ_g.27 AT3G15950_circ_g.28 AT3G15950_circ_g.29 AT3G15950_circ_g.30 AT3G15950_circ_g.31 AT3G15950_circ_g.32 AT3G15950_circ_g.33 AT3G15950_circ_g.34 AT3G15950_circ_g.35 AT3G15950_circ_g.36 AT3G15950_circ_g.37 AT3G15950_circ_g.38 AT3G15950_circ_g.39 AT3G15950_circ_g.40 AT3G15950_circ_g.41 AT3G15950_circ_g.42 AT3G15950_circ_g.43 AT3G15950_circ_g.44 AT3G15950_circ_g.45 AT3G15950_circ_g.46 AT3G15950_circ_g.47 AT3G15950_circ_g.48 AT3G15950_circ_g.49 AT3G15950_circ_g.50 AT3G15950_circ_g.51 AT3G15950_circ_g.52 AT3G15950_circ_g.53 AT3G15950_circ_g.54 AT3G15950_circ_g.55 AT3G15950_circ_g.56 AT3G15950_circ_g.57 AT3G15950_circ_g.58 AT3G15950_circ_g.59 AT3G15950_circ_g.60 AT3G15950_circ_g.61 AT3G15950_circ_g.62 AT3G15950_circ_g.63 AT3G15950_circ_g.64 AT3G15950_circ_g.65 AT3G15950_circ_g.66
Support reads 1
Tissues whole_plant
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTGAGAGAACAAGACACAGAGACAAACCCAGAGCTAAAAACTTTGTTCCCATGGTGGAAGATT
GTTATCACAAAGATCAAAATACACTGTGTTGTGAAGagttttctccattagcctttgcatttgt
agcagctgcaaattagaaaaatgaacaagaagatgaaaccaaactgtcatattatatactatcc
ttgtttct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGTTTTCTCCATTAGCCTTTGCATTTGTAGCAGCTGCAAATTAGAAAAATGAACAAGAAGATGA
AACCAAACTGTCATATTATATACTATCCTTGTTTCTATATGAATTCATGCGTTTGGTTCTTAAG
GTTACCTTCAAATTCGCGTTCGAATGCTTCCAACATACTGTTTCTCTTGTTTTCAGCTGTTAAC
AAAAAATAAACATCGTCTTAAAAACTTGTCTCAGATGGATTTGAGAGGAGCAAAAGGATCAGAT
TATTTACCTTGTTCTGATTCATTCTTTAACTCTTCAAGGCCTTTTGTCGCGGCTGAAACAAGAA
ATAAGAAACTCAGATTACTTTGATCACTTTTATATGATTCCGATTCATCTAGTTATCAAGGCTT
GGTCACCAACAATGGCTCAAGAATATATGTTAAAGTACCTTCAAACTCGCGTTCAATAGCTTCA
AGCATAATTTTTCTCCTTGCAACTGTAACAAAACATGGAAACAGAGCTGGCTCAGGATACAACA
GAACAATATATACAAAATAGAGGAATATGGGGAAGAATAGTTACCGTGTTCATCATCATCCTTG
TCGCCGGTTGAATCATTAGCCTTTAGCTCTTCAAGACCTTTTGTAGCAGCTGCGAGTAAGAAAA
TAAAAGAGAAGAAACTTAAGTACTTGACCTTTTAGAATGGATTTACATTTCAGCTAGGAAGTTC
AATGTTATGTGAAAATGACCTTCAAACTCGCGTTCGATAGCTTCAAGCATACTATTTCTCCTTG
CAGCTGTATCAAAACATACAAAAAAATCTTCAAAATACTATAGAAGATGCAAATATGATCAGAG
AAAGTAGAGAGGACAAGTTATTACATTCTGCACTGTCATCTCCTTCACTGAAATCGTCAAGGTT
TAGTTGCTTAAGACTATTTGTAGCAGCTGCAAAGTAGTTTGATAAACAGAGGAAATAATTCAAG
ATTTTATATGGGAACCATAAGAACTAATTAACATCAATAATAAGTACCTTCAAATTCACGTTCA
ATCTCATCCAACATACTTTGCCTCTTTGCAGCTGATTAAAAAGACATAAAAACCTCTCTCAGAA
TAACACTACAATAAAGGTAAATGAACCAAAAAATGTTGAGTGGAAAGATTTTTCTTACATTCGT
CGTCTCCTTCAGCTTTGTTATCGGCGATATCTTCAAGTTGTTTAAAACTCTCGGTAACGGCTGC
AAGAGAGAAAAAAAAAACTCTTAGAACTTCTTTGAACAATAAAGAGTTAAAGATTCTCTCTGCA
TATGATGATTGGTATGTCGATTTACCTTCAAACTCACGTTCAATTGCATCTAGCATACTTTGTC
TTTTGGCATCTGTAAATAAAGCATAACATCTAGCTATCTCAGAAAACTAAATGAGGGACATAAG
TTATCAAAGTAGAGATAACAGTTTCTTACCTTGTTCTTTATCATCAACATCATCTTTGACAGTG
TGAGCATTAATCTTTAGCTCTTTAAGACCACTTGTAGCAGCTGCAAGTACAAAGATGAAACATA
ATCATAAATCCAATAAGTCTCAACACAAATATTGTGAATCAATTAAGACAGATATTGAGTGTGT
CAAAATACCTTCAAACTCCCGTTCGATCTCATCTAGCATATTCTGTCTCTTTGCAGCTATAACA
ATAACAAGACATTAGATTTGTGTTCTGAGTAGTGTATCTGAGACTAAAAGATCATTTAAATAGA
GGGAAACAAAAGATTACATTGTGCTTCATCATCTGTGCTTGAGGTAGAATGCCTTAGTTCTTCA
AGACCTTTTGTAGCTTCTGCAAACAGAGGAATTACAGAGTCTAAGATGGTTCTCAAGAAGATAT
TTCATTAAAGACTTATTGGTTATACTTATACGTTTCAAGATACCTTCAAACTCTCTTTCGATCT
CTTCAAGCATCTTTTGTCTCTTTGCAGCTACAACAAGATAACAAAATCCGACTCAAGAATACTG
TAATACAGACAAAGGCATCAAACAACGTGAAACATAGAGGTTTCTTTACCGTGTTCTTCATCGT
TGATTCCAGTTAAATCATCAGCCTTTAGTTGCTCAAGACCTTTTGTAGCAGCTGCAAGTGGAAA
TGGAACAGAAGACACAACCCAATTGTTACTTCAACTTTTCAGGTTCAAGAACTTAAGTAAACAA
GAATAAAGATTTTGTAGAGAGACCTTCAAAATCACGTTCAATCTCGTCCAACATGCTTTGTCTC
TTTGCAGCTGTAACAAAAAGAACAGAGAAATTGGACTTAGAATGTTGAAGAAGAACCAAAATGT
GATCGTAACTAGTACTAGACAAAGAGTGTTTAGTTACATTGTTCATCATCTAATCCTTGGGCGG
AATCATCAGTCTTTAGTTGTTCAAATCCAGCATGAGCAGCTGCAAGTAAATCTCTGTAAGTAAG
ACTCTACCAAAACAATGGTTTCAAAAATATAAACTTCAAGCTAGACAGAAACATTGATAGGTAC
CTTCAAATTCACGTTCAATGGCTTCCAACATTTTATGTCTCCTTGCAGCTAAAACAACAAAGAA
AGTATAAGAGAAATCTCTTAGCACAAAGGTATCTGATCAAAGAGACGTGTTCTTTTCTTTTCTT
TTTAACCTTCTTCATCATCTTTAGATTCCTCAACTTTGTTGATACCATCAGATCCAGCTTCTTT
AAGTTCATTGATATGTGCTATAATCAAGAACACACAAACAAACTCTTCATGTCAATATTTTGAT
CCAAGCCTCTTCCATAGACATAATTATGAGACTTTTAAGAAAACAGTGCAAATACAGAGTAAAG
GTCTCGACTTACCTTCGAACTCAAGTTCAATATGGTCCAACATACTTGAAGGTTTATCGACTTC
ATCAGTAACAGCTCCTAACTATATAGATCCAAAGTAGAAGAAACCAGATATTAAATTTCAGGAG
TCTTTAAAACATAGTCATCCTAAACCAAAATCCAATCCCAAAAGTTAATTCATAGACAGGAATT
AACCTCAGCTGATGTATCAACAGATTCTTTAAGAGTTTCCAATGCAGGTTCTTCAGATAGAGAC
AAAGAAATAGTGTTGTTATCAGACACTGTACTGTTTTTCTGACCACTGGTCTCAGCTGATTCCA
CACACACAACACAGTGACTATATCAAATAACAAATTGCAGAAGAAGAAAAGAAACAAGAAAGAG
AGACAGAGAGAAAGGTCTTACTTTGATCTACTGCTTCATTGCCTTGGAGAGAATTGACACTAGC
TGCAACCAAATGATAATTTTAAGAGAATTGTGTTTCATCTAAAAGATTATTCAGACAAATATAT
CGTAAGCCTTACTTTGATATTCATGCTCAATTAGATCTAAAGTACTCAAACTTCCAGTTCCTTC
ATCCTAAAACCAAAAGTCAAATGCGTTTGAATATCAGTTGATCATTTCTTTATCGTAAAATATA
TATTGGTAAAGCAATTGTATTTTTGTGTACTACCTGGCAAGAAACTTGATAGAAGCTTGAGAGA
ACAAGACACAGAGACAAACCCAGAGCTAAAAACTTTGTTCCCATGGTGGAAGATTGTTATCACA
AAGATCAAAATACACTGTGTTGTGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.12620225
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs ath-miR849
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017