Detail information of AT3G15950_circ_g.4


General Information
CircRNA Name AT3G15950_circ_g.4
ID in PlantcircBase ath_circ_022016
Alias NA
Organism Arabidpsis thaliana
Position chr3: 5399047-5402651  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method PcircRNA_finder
Parent gene AT3G15950
Parent gene annotation TSA1-like protein
Parent gene strand -
Alternative splicing AT3G15950_circ_g.1 AT3G15950_circ_g.2 AT3G15950_circ_g.3 3_circ_igg.5 AT3G15950_circ_g.6 AT3G15950_circ_g.7 AT3G15950_circ_g.8 AT3G15950_circ_g.9 AT3G15950_circ_g.10 AT3G15950_circ_g.11 AT3G15950_circ_g.12 AT3G15950_circ_g.13 AT3G15950_circ_g.14 AT3G15950_circ_g.15 AT3G15950_circ_g.16 AT3G15950_circ_g.17 AT3G15950_circ_g.18 AT3G15950_circ_g.19 AT3G15950_circ_g.20 AT3G15950_circ_g.21 AT3G15950_circ_g.22 AT3G15950_circ_g.23 AT3G15950_circ_g.24 AT3G15950_circ_g.25 AT3G15950_circ_g.26 AT3G15950_circ_g.27 AT3G15950_circ_g.28 AT3G15950_circ_g.29 AT3G15950_circ_g.30 AT3G15950_circ_g.31 AT3G15950_circ_g.32 AT3G15950_circ_g.33 AT3G15950_circ_g.34 AT3G15950_circ_g.35 AT3G15950_circ_g.36 AT3G15950_circ_g.37 AT3G15950_circ_g.38 AT3G15950_circ_g.39 AT3G15950_circ_g.40 AT3G15950_circ_g.41 AT3G15950_circ_g.42 AT3G15950_circ_g.43 AT3G15950_circ_g.44 AT3G15950_circ_g.45 AT3G15950_circ_g.46 AT3G15950_circ_g.47 AT3G15950_circ_g.48 AT3G15950_circ_g.49 AT3G15950_circ_g.50 AT3G15950_circ_g.51 AT3G15950_circ_g.52 AT3G15950_circ_g.53 AT3G15950_circ_g.54 AT3G15950_circ_g.55 AT3G15950_circ_g.56 AT3G15950_circ_g.57 AT3G15950_circ_g.58 AT3G15950_circ_g.59 AT3G15950_circ_g.60 AT3G15950_circ_g.61 AT3G15950_circ_g.62 AT3G15950_circ_g.63 AT3G15950_circ_g.64 AT3G15950_circ_g.65 AT3G15950_circ_g.66
Support reads 2
Tissues whole_plant
Exon boundary   Yes-No
Splicing signals   GT-AC
Number of exons covered AT3G15950.4:16
AT3G15950.1:24
AT3G15950.2:22
AT3G15950.3:16
AT3G15950.5:14
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAGAAGCTTGAGAGAACAAGACACAGAGACAAACCCAGAGCTAAAAACTTTGTTCCCATGGTGG
AAGATTGTTATCACAAAGATCAAAATACACTGTGTTagttttctccattagcctttgcatttgt
agcagctgcaaattagaaaaatgaacaagaagatgaaaccaaactgtcatattatatactatcc
ttgtttct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGTTTTCTCCATTAGCCTTTGCATTTGTAGCAGCTGCAAATTAGAAAAATGAACAAGAAGATGA
AACCAAACTGTCATATTATATACTATCCTTGTTTCTATATGAATTCATGCGTTTGGTTCTTAAG
GTTACCTTCAAATTCGCGTTCGAATGCTTCCAACATACTGTTTCTCTTGTTTTCAGCTGTTAAC
AAAAAATAAACATCGTCTTAAAAACTTGTCTCAGATGGATTTGAGAGGAGCAAAAGGATCAGAT
TATTTACCTTGTTCTGATTCATTCTTTAACTCTTCAAGGCCTTTTGTCGCGGCTGAAACAAGAA
ATAAGAAACTCAGATTACTTTGATCACTTTTATATGATTCCGATTCATCTAGTTATCAAGGCTT
GGTCACCAACAATGGCTCAAGAATATATGTTAAAGTACCTTCAAACTCGCGTTCAATAGCTTCA
AGCATAATTTTTCTCCTTGCAACTGTAACAAAACATGGAAACAGAGCTGGCTCAGGATACAACA
GAACAATATATACAAAATAGAGGAATATGGGGAAGAATAGTTACCGTGTTCATCATCATCCTTG
TCGCCGGTTGAATCATTAGCCTTTAGCTCTTCAAGACCTTTTGTAGCAGCTGCGAGTAAGAAAA
TAAAAGAGAAGAAACTTAAGTACTTGACCTTTTAGAATGGATTTACATTTCAGCTAGGAAGTTC
AATGTTATGTGAAAATGACCTTCAAACTCGCGTTCGATAGCTTCAAGCATACTATTTCTCCTTG
CAGCTGTATCAAAACATACAAAAAAATCTTCAAAATACTATAGAAGATGCAAATATGATCAGAG
AAAGTAGAGAGGACAAGTTATTACATTCTGCACTGTCATCTCCTTCACTGAAATCGTCAAGGTT
TAGTTGCTTAAGACTATTTGTAGCAGCTGCAAAGTAGTTTGATAAACAGAGGAAATAATTCAAG
ATTTTATATGGGAACCATAAGAACTAATTAACATCAATAATAAGTACCTTCAAATTCACGTTCA
ATCTCATCCAACATACTTTGCCTCTTTGCAGCTGATTAAAAAGACATAAAAACCTCTCTCAGAA
TAACACTACAATAAAGGTAAATGAACCAAAAAATGTTGAGTGGAAAGATTTTTCTTACATTCGT
CGTCTCCTTCAGCTTTGTTATCGGCGATATCTTCAAGTTGTTTAAAACTCTCGGTAACGGCTGC
AAGAGAGAAAAAAAAAACTCTTAGAACTTCTTTGAACAATAAAGAGTTAAAGATTCTCTCTGCA
TATGATGATTGGTATGTCGATTTACCTTCAAACTCACGTTCAATTGCATCTAGCATACTTTGTC
TTTTGGCATCTGTAAATAAAGCATAACATCTAGCTATCTCAGAAAACTAAATGAGGGACATAAG
TTATCAAAGTAGAGATAACAGTTTCTTACCTTGTTCTTTATCATCAACATCATCTTTGACAGTG
TGAGCATTAATCTTTAGCTCTTTAAGACCACTTGTAGCAGCTGCAAGTACAAAGATGAAACATA
ATCATAAATCCAATAAGTCTCAACACAAATATTGTGAATCAATTAAGACAGATATTGAGTGTGT
CAAAATACCTTCAAACTCCCGTTCGATCTCATCTAGCATATTCTGTCTCTTTGCAGCTATAACA
ATAACAAGACATTAGATTTGTGTTCTGAGTAGTGTATCTGAGACTAAAAGATCATTTAAATAGA
GGGAAACAAAAGATTACATTGTGCTTCATCATCTGTGCTTGAGGTAGAATGCCTTAGTTCTTCA
AGACCTTTTGTAGCTTCTGCAAACAGAGGAATTACAGAGTCTAAGATGGTTCTCAAGAAGATAT
TTCATTAAAGACTTATTGGTTATACTTATACGTTTCAAGATACCTTCAAACTCTCTTTCGATCT
CTTCAAGCATCTTTTGTCTCTTTGCAGCTACAACAAGATAACAAAATCCGACTCAAGAATACTG
TAATACAGACAAAGGCATCAAACAACGTGAAACATAGAGGTTTCTTTACCGTGTTCTTCATCGT
TGATTCCAGTTAAATCATCAGCCTTTAGTTGCTCAAGACCTTTTGTAGCAGCTGCAAGTGGAAA
TGGAACAGAAGACACAACCCAATTGTTACTTCAACTTTTCAGGTTCAAGAACTTAAGTAAACAA
GAATAAAGATTTTGTAGAGAGACCTTCAAAATCACGTTCAATCTCGTCCAACATGCTTTGTCTC
TTTGCAGCTGTAACAAAAAGAACAGAGAAATTGGACTTAGAATGTTGAAGAAGAACCAAAATGT
GATCGTAACTAGTACTAGACAAAGAGTGTTTAGTTACATTGTTCATCATCTAATCCTTGGGCGG
AATCATCAGTCTTTAGTTGTTCAAATCCAGCATGAGCAGCTGCAAGTAAATCTCTGTAAGTAAG
ACTCTACCAAAACAATGGTTTCAAAAATATAAACTTCAAGCTAGACAGAAACATTGATAGGTAC
CTTCAAATTCACGTTCAATGGCTTCCAACATTTTATGTCTCCTTGCAGCTAAAACAACAAAGAA
AGTATAAGAGAAATCTCTTAGCACAAAGGTATCTGATCAAAGAGACGTGTTCTTTTCTTTTCTT
TTTAACCTTCTTCATCATCTTTAGATTCCTCAACTTTGTTGATACCATCAGATCCAGCTTCTTT
AAGTTCATTGATATGTGCTATAATCAAGAACACACAAACAAACTCTTCATGTCAATATTTTGAT
CCAAGCCTCTTCCATAGACATAATTATGAGACTTTTAAGAAAACAGTGCAAATACAGAGTAAAG
GTCTCGACTTACCTTCGAACTCAAGTTCAATATGGTCCAACATACTTGAAGGTTTATCGACTTC
ATCAGTAACAGCTCCTAACTATATAGATCCAAAGTAGAAGAAACCAGATATTAAATTTCAGGAG
TCTTTAAAACATAGTCATCCTAAACCAAAATCCAATCCCAAAAGTTAATTCATAGACAGGAATT
AACCTCAGCTGATGTATCAACAGATTCTTTAAGAGTTTCCAATGCAGGTTCTTCAGATAGAGAC
AAAGAAATAGTGTTGTTATCAGACACTGTACTGTTTTTCTGACCACTGGTCTCAGCTGATTCCA
CACACACAACACAGTGACTATATCAAATAACAAATTGCAGAAGAAGAAAAGAAACAAGAAAGAG
AGACAGAGAGAAAGGTCTTACTTTGATCTACTGCTTCATTGCCTTGGAGAGAATTGACACTAGC
TGCAACCAAATGATAATTTTAAGAGAATTGTGTTTCATCTAAAAGATTATTCAGACAAATATAT
CGTAAGCCTTACTTTGATATTCATGCTCAATTAGATCTAAAGTACTCAAACTTCCAGTTCCTTC
ATCCTAAAACCAAAAGTCAAATGCGTTTGAATATCAGTTGATCATTTCTTTATCGTAAAATATA
TATTGGTAAAGCAATTGTATTTTTGTGTACTACCTGGCAAGAAACTTGATAGAAGCTTGAGAGA
ACAAGACACAGAGACAAACCCAGAGCTAAAAACTTTGTTCCCATGGTGGAAGATTGTTATCACA
AAGATCAAAATACACTGTGTT
Conservation Information
Conserved circRNAs NA
PMCS 0.1262736
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs ath-miR849
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017