Detail information of EPlOSAG00000003561_circ_ig.2


General Information
CircRNA Name EPlOSAG00000003561_circ_ig.2
ID in PlantcircBase osa_circ_003465
Alias NA
Organism Oryza sativa
Position chr1: 28693487-28696062  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing EPlOSAG00000015089_circ_ig.1 EPlOSAG00000015089_circ_ig.2 EPlOSAG00000003561_circ_ig.1 EPlOSAG00000020057_circ_ig.1 EPlOSAG00000020057_circ_ig.2 EPlOSAG00000020057_circ_ig.3
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TACTAACCTCATGGATCAGATTATGGACTGCATCTTTAAACTGCTTCGTCCAAGCCCACATCTC
TTCAAGCCAAGCATCAACCCTTCCACACTTATTAATcttgctagcacgagaagcgcgctcaata
tttctagtcatcttctctacttgcctaataatctgttctgttgcttcaccagggctcagaacac
gaagctgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGCTAGCACGAGAAGCGCGCTCAATATTTCTAGTCATCTTCTCTACTTGCCTAATAATCTGT
TCTGTTGCTTCACCAGGGCTCAGAACACGAAGCTGCCTTACCAGAGTATCCTTGGACTGTCCAG
ACAAGAATGGCCACAATTAATTTCAGAAATAACAGGGAGCATACAAGGCCCAATTAAATGCACG
AACACAGTTAAGTCCATCAAACAACATGAAAGCAGGAAAGGAAACATGATATTTACAAATCCTA
TATAGACATGGGAAAGTAGTAAAGCCAGATCCTAGAACAGAGCTAAAAAACCCAGTTCATTTAG
TTAACTAGAAAAAGCAATGGGAGGCAGTACAAGCTACTTTATATGTATTATAAAATCCAAGAAG
CATTTTAAGCTCACACAGCTCACTAGTTGATACTACGAGTATTTAAGTATTATTAGCATTCATG
TGATGGCACAGTTACATGGAACTTAATAGATGAAAGAAGATAACCAGATATCCACTAAATAATT
AGAACAGAAATGCACAAACTGGACCATATAAGTCATTAGTTGATTATTATACACAGCCATCCTT
CATGTGTAAGGAAAGCAGCCATTAAGACAACTATACGTCCTACATCTATTATCAGTGTCACTAA
CTAATTTCATCAAAATTTATCATTAGATAATCATTAATCAAGTGACAATCATTTCACATGACAT
TTTTGCAAGTTAGCTAAGTTAATTTGTTTTCGTGACAATAAACCACAAGGACAACTTTACTTTT
TTTTTTACTGAAATGAATGGCTTTCGGTATGATTATTTAAACAGTTAAATCAAGGACCGTGCAC
TAGAATCTACTAGTGTAGGCATGTAACACTAACAAAACAAGCTCAAGGATTAAAAAACTAAACA
GGAGAACATGCAAAAAAAAAAGAAAAAGAAAAAGAAGAAGAAGAAGAAGATAGATGAGTACATT
TTGTATACTTTGAACTCTAGAAAATGGTAAAGATGGCATATAACTATAAGGTGAGCTCACCTCA
ATCATTGCCTGGCAAGGACTCCTTAGAAACCCTAAAAAAGCTGTTTTCAGGGAATACCGCAGAC
TTGCAGGATGAGCTCCTTTTGCAACCTCCAAACTAGGGTCAAAACCAAGTAGCACTGGCAGTAT
GCGTTCGTAGTAAACAGGTCTATTCTTTGCAATAGCTGCAAGACTGGAAAGTGACAAACATTTA
TATTTCCAAAAGATAACAACATAGTTTGCAAGGTTGTACTGATAGTAAGATAACTTCCAACAGG
AAAAAGACATTCCGAACATTAAAATCTTAAAGTAGCAGGCAACCACATGGACATAGTACAGTTG
CAAGCTTTGCTCATTGGTAAACCTCATCACTGCCCATGTCTGTTGCGGCCAATTATATAACTGA
AGTAAAGAACACAAAAGCCTAAATAAATGTTACGGTACCCACTTCACAAAGTACAACACTATGG
GGATATCACTATAGATGTGTGACAGGTCAGAGACAACATAAGAAATAGCTACTGTGCATAAAAT
GAAACTGAATCAGAAACAACAGTTTATAAATGACACAAATAGCTATCCGCCAATCCATATATGG
AGGCGACAACTCAAAACGAGCAGAAGGTAGAGGGAACTGGTACAGAGTCTTACGAATTAATGGT
GCCAACTAGGAAGGATCCTTGATGAGCACAAGCTGACTGCAGTATATCCACAAGGAGGATGAGA
GCCCTGTTTGCATCAGCTTCGAGAACAGCAGGGTTAAGGCTGGGATGGAATTGAGATAATCTTG
AACTATCAAACAACCTCCTGTTCCTTCCTGTTTGTACAGCGAAAATACATTTCATTACTTTGAT
TGCAGGACCACATTATGCCCATTAATTCTTTGCAAAAATCTGCCTTAAAATACCTTCAGTTGGC
TGCATCCGGTCACTTTTGGATTGAGGTGCGAAACACAGGATCCATGTTTCAATGAACTTTACAG
CAAACAGTTTAGTAGCAACTGGGACAGACTGTTGTATATCACATGAAGAATAGCATTAGTCTTG
GATTGAGCAGAAACAAAGAACTAAACCATCAATTCAAGTTTCAAAGTAGTCATTTTTTTTTTTG
CGAGGAAAGTAGTCATTAGTTACAAAGCTGTGTATTTTCAGTAGGATGAGCAAAGAAGAGGTAG
TCTGGCTCCTTTTCTTCATATCATATCACAAGGGCAGGGATGGGATTACTGTGGAATAATTCCC
ACTTTCGTAGTGCTCTGTGCTCAACATAGTCACAAATACACTCCACAAAAGAAAGTTTTTCCAG
AGCACTAGATCATAGTTTTACATAAAATAAAGAGAAACAGTATAATAAAAAACCTGATATATGT
AGGTTTTGTACTTTCATTTTATCTGCTAAATAGTGCTTGCAAATACACAACAGAACAACCACAG
TATCAACGTATTATTGAAATTACGCAACGCATGAACTTGTATGCTACTAACCTCATGGATCAGA
TTATGGACTGCATCTTTAAACTGCTTCGTCCAAGCCCACATCTCTTCAAGCCAAGCATCAACCC
TTCCACACTTATTAAT
Conservation Information
Conserved circRNAs NA
PMCS 0.22744943
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017