Detail information of EPlOSAG00000020057_circ_ig.2


General Information
CircRNA Name EPlOSAG00000020057_circ_ig.2
ID in PlantcircBase osa_circ_003467
Alias NA
Organism Oryza sativa
Position chr1: 28694700-28695139  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing EPlOSAG00000015089_circ_ig.1 EPlOSAG00000015089_circ_ig.2 EPlOSAG00000003561_circ_ig.1 EPlOSAG00000003561_circ_ig.2 EPlOSAG00000020057_circ_ig.1 EPlOSAG00000020057_circ_ig.3
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   GA-AT
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACAGTTTATAAATGACACAAATAGCTATCCGCCAATCCATATATGGAGGCGACAACTCAAAAC
GAGCAGAAGGTAGAGGGAACTGGTACAGAGTCTTACttatatttccaaaagataacaacatagt
ttgcaaggttgtactgatagtaagataacttccaacaggaaaaagacattccgaacattaaaat
cttaaagt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTATATTTCCAAAAGATAACAACATAGTTTGCAAGGTTGTACTGATAGTAAGATAACTTCCAAC
AGGAAAAAGACATTCCGAACATTAAAATCTTAAAGTAGCAGGCAACCACATGGACATAGTACAG
TTGCAAGCTTTGCTCATTGGTAAACCTCATCACTGCCCATGTCTGTTGCGGCCAATTATATAAC
TGAAGTAAAGAACACAAAAGCCTAAATAAATGTTACGGTACCCACTTCACAAAGTACAACACTA
TGGGGATATCACTATAGATGTGTGACAGGTCAGAGACAACATAAGAAATAGCTACTGTGCATAA
AATGAAACTGAATCAGAAACAACAGTTTATAAATGACACAAATAGCTATCCGCCAATCCATATA
TGGAGGCGACAACTCAAAACGAGCAGAAGGTAGAGGGAACTGGTACAGAGTCTTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.214318182
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017