Detail information of AT3G06880_circ_g.5


General Information
CircRNA Name AT3G06880_circ_g.5
ID in PlantcircBase ath_circ_020186
Alias NA
Organism Arabidpsis thaliana
Position chr3: 2172733-2172978  JBrowse»
Reference genome TAIR10.38
Type   ei-circRNA
Identification method PcircRNA_finder
Parent gene AT3G06880
Parent gene annotation Transducin/WD40 repeat-like superfamily protein
Parent gene strand -
Alternative splicing AT3G06880_circ_g.6 AT3G06880_circ_g.7
Support reads 11
Tissues inflorescences
Exon boundary   No-No
Splicing signals   CC-TA
Number of exons covered AT3G06880.1:1
AT3G06880.4:1
AT3G06880.5:1
AT3G06880.3:1
AT3G06880.2:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTGATAAAAGCTGCATATTTGAACCTTCACTATATGTAACTGCATCAAGTAGAGCTCTGGTAG
CTTCATTTCTGTACTTTTTGTTCTCAGGTGGAGAATcctgcaagcattcatctgaccagttgat
gtttcttatcatattcatatgtgacatagaagttagacctcctcttttcattagccaagcagca
gtgtaagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGCAAGCATTCATCTGACCAGTTGATGTTTCTTATCATATTCATATGTGACATAGAAGTTAG
ACCTCCTCTTTTCATTAGCCAAGCAGCAGTGTAAGGTTCTCCTGTCCATGAATAAGTTCCACCG
ATATTCGCAAGAATGAACGTTGATAAAAGCTGCATATTTGAACCTTCACTATATGTAACTGCAT
CAAGTAGAGCTCTGGTAGCTTCATTTCTGTACTTTTTGTTCTCAGGTGGAGAAT
Conservation Information
Conserved circRNAs NA
PMCS 0.453954678
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017