Detail information of Os05g0306000_circ_g.2


General Information
CircRNA Name Os05g0306000_circ_g.2
ID in PlantcircBase osa_circ_027345
Alias Os_ciR9780
Organism Oryza sativa
Position chr5: 13841391-13846381  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os05g0306000
Parent gene annotation GOLD domain containing protein. (Os05t0306000-01)
Parent gene strand -
Alternative splicing Os05g0306000_circ_g.1 Os05g0306000_circ_g.3 Os05g0306000_circ_g.4 Os05g0306000_circ_g.5 Os05g0306000_circ_g.6 Os05g0306000_circ_g.7 Os05g0306000_circ_g.8 Os05g0306000_circ_g.9 Os05g0306000_circ_g.10 Os05g0306000_circ_g.11 Os05g0306000_circ_g.12 Os05g0306000_circ_g.13 Os05g0306000_circ_g.14
Support reads 2/1
Tissues root/shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os05t0306000-01:13
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGAGCAAAATTTCTTCCATTTGTTCTCTATTTTTCCACAAGTTTTCATCAATTTTGTGAGCAG
GTATCCCATTAGCTTCTTTTTCCAAGAGCTCCTCATctttttgaagaatgacgaatatgagttg
tcccaaacaagcttgtatgatccggcagagacagtgcagaagttaccctgtgtaggacaaacca
aagctgaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTTTGAAGAATGACGAATATGAGTTGTCCCAAACAAGCTTGTATGATCCGGCAGAGACAGTG
CAGAAGTTACCCTGTGTAGGACAAACCAAAGCTGAAGCATTCAAAACTAACACAAATGAAATGC
ATTCACATCATAGCCTCTTAAAACTGAGCCTAATTCAGAGATAATACTGTTATATTATTTCCAA
ACCCATTCTTCTAACTCGCTCGCTACAACCTGGATCTATCGATTGGACAAACAGAGCTATAAAT
GGAATCCAAGAATATGGTATTTTAATTTAAAGAGAGCATAAGCATGAAACTGCACTCACTTGGT
CAGCTTCATATCGTCGGTAGGGAAGTATTAACTGCAAAACATACAGTTCTTGTTACAAAAAAGT
AGAAACAAAATAAACAACAATACTCCAGTGTTATAAATATATTTTATTAAACAAAACAATGTGG
AGAAATGTCATACCATTAACTACAAGTACCTAATTAGGACAAACGCGTAAAACCACAGGCAACC
CTAACTATATTTCTTTCTAGGTATACAGAAAATGTTTTTTTTTTAAAAAAGAATGTTCATCTAT
AGGTGATTTTGGGTGGAATAATAAAGGGAAACCCTAAGTTTCCCAGATTGTGTACATATTGATA
TCGTGCACACCTTACAAATTAAGCCCCCTATGCATTATTTTTTTTATTAGTCAAAAAAAGTTGA
CACCAAATAGAGAAACAAGGACAAGGCTAAAGCAGATACAAGATAAGGCCTCTTGGGAAAGTCA
GAAATTGATATTTATTGCTGTTAGGAAAAATACCACCACAGCCTGTCCCAGTGAACCAACCAAT
TCCAGACAATTTTTGGCTGACATGGTTGTCTACTTTTTTCCCCCTCAAATGGTATGCATTGTGT
TTCTTCAATCTTGGGTAATCCTTATCAAGTTACCATCTATACTCCATTAAATTGCTATCCGACT
CCAAAAATACTCTTTGCTCAAAATCTTATTCTTGCTGGAATTGTGAACTGTGTAATGTTGTACA
CATGGTACACATGACGGTAGCATCAAAGGAATGGTCTGGCTTTATAGCTCGAGTCCAGCTTTGC
CGTCACAATCTGTGAGTCCATCTTTATAGGAAATCTTTAAACAATTAAATTCTAGCTGCTGGTT
ATCTCCTGCTTTTTGTTGGTGCGAAAAACCAGCCCAGTTAGACTGGCTTTCACCAGTTTGAAGC
AGGTCGAGTGCATGAAAACAATCCTATTAACAAACTGGATTTCTGCTTTATCTGGTTGGGCTGC
CATCTTGGAAGGGGAGATGAACACAAATGCAAGCTGCTTGATGTTATATACTTGGCATATATGC
TTTTATGTGATGTCTAGATTCTAAATAGATGCTTGGAATGACAAGACAAGAACTTGTGCTGGAT
CAGAATGTTCCAGGCGTCTCAGGTCAAAATAAAACATTATCTTAGCATGAACAAATGGCATTCA
AGATAACAACCAGATTCCAACAGTAGCTTTATTGATTTTGTACACAGTTTCACCAGTTGCAAAC
TGTTATTGCTATTCAATTGTTAACTCGCAAACAATTTGCACCATATGCCCATTATAAACTAGAT
CTAGAATACCGGTATCAATCCATAGTATGCACAGCAGCTATAATTCATGCTGCTAAATGCATTG
ACATGATCAATGTAGAAGAATGAAATATCATAGCAAACAAGATGTCTTCAGGTTATTTCAGTTC
ATTTTATGAACATGAAAGATAAGTCATATTTTCCCAGAGATAAAAGAAACTTACAGTTTTCTGG
CCTGATGGGCTTATGTACTCCACATGAAAACCAATATCCTGTCCATGTCAAATCCATCACTAAA
AATTTAGGAACATTTCATGCACTACCAAAGCATTTCAACTGAGAAATTAACTGTCATCAAGCTT
CAAACTAGTCAATTCAAAACGTATTAGATTATGACCATTGGTTCAGCTACATAATTTAGATATA
ATCTTCTAGGCTTTGAGCTGTACCGTTTATTCATGTTAGATTGACCACTATACACCAAAGATAC
GGTAATATAATGAAGGACTAAGCTATTAAAAGTATAACGAGGAAGATGTCAGTTCTGAACACAG
TAATTAAATCACCTCCTACTAGCATTTAAGGATTATGAAAACAACAGGTAAGGAAAGGCTGCAA
AAAAGAATGTGTTCGCCGTGGGGGTGAGGGGGTTGAACTGAAAGGACTGTTTTTCTTCTGTAGA
GTAAAAACCAGGAGCTCTGCTATTCATTATAGCATGGGAAGATGTTTATTCATAAGGATAGAGA
TTTTACCAAGACCATGTTGAGGGCCCCTTGTTGCAAGGAGAAGTCCCATGCAATGTATGAGTTG
ACAGCCTCAACACTAAGAATAACCTGAAGAATATGAATGACACAACATAAGCACTTCAGGACAC
TCCAAGTGACAATGCACTGTACTAAATGTTCCAACAAAATACAGTTCAATGCACTTCGATTTCT
ACAGACCAAATTTTCCTTACATATTATTCTATAATATCCAGAAAAACAATTGTGCCCAACTCAA
CTGATACCTCATGTGTCTTTCCTGCTGGAATAATGGTTTCTTTGTAGTCGTCGCTGTTCCTACA
AAAGGAGTAGAAGAAAAGTAGGTAATCTTCCTGTTCTGCAAACTTATCTGAGATAAAATGCTCA
ATTACCAAGGTATGATGCACCATAACTCTACTGCAAGGAGAAAGTACCTTGATTCAGCACCTGC
ATCCTCAGCAGATATGAAGAATGGGGCATTCACAAAAACTTCGCTGCAATTGAGTGCCACTTTT
AGTTAACAAGTTCTAGATATATATTAAGGTGTAGTATTACATGGCAACCCTGCATTTGATAAGC
ATCAAAACTGCAGAGTTGACTAAACTTTTTATGCTTATTTGCAGGTTTTGTTATTCCCACAAAT
GAAATTACAATTAGCTGATTTCGGAAAGTGATTTTGCTTGGGTTGGGGGTGGGGGCTTGGCAGG
AGGTGCAAACATAGCTAAAGAAGAGCTGAACTGACGACTCAAAATGCCATACAGTTAATAAGTA
AAACAACATATAAAACCGCAGCCATGCCAACCAAAAAAGAGAACAACTACGGCATTAAATCTAT
ATCAAAGCCTTAAAAAAAAGAAACCCAAAATAGTTCTTGAATATAACAGGAGAAAATAGTAGTC
TTGTTTATTTCTAGTTTGCAAAATGCACATTCGCTTTCCACAGAATACAAACAGAAGATTGCCA
TAATTTAAACAGAAAATGCATAATTAAGCGCAATAAATGGTGTTTGATAACAAAAACTATCATT
ACCCTATGAATTCAGTGAACTTCTCAAATTCCTCGGTGTAGATAGCCACAGCCTGCTGCAACAC
AGCAATGTCATCCTTTTCTCTGTTCATTTTTTTTTTCATAAATAATTTTAGGAAAAGGTCATGA
TGTCTCAAAAGAATGTGATATAATAGTTAGTAAAAGACAAGGAGAATTCTACCAAATAGAAGTT
CTCACATTTTCCTCTGCCCATATCGTGCTAATGACACGTGTAGATACAATCGAATTGCAAGCAC
CAGTTTCGTAAGAGTGTAAAGTGCTGGCCCATAACGTTCTCTTTGCTCTTCCATAGGTCTGAAT
AGAAATTTCAATTGAAAAACAAATCAACTATTCATGCCATTACTGATTACTCCGTAAACCACAA
ATCTAGTATACATGGTACTATTTGCGAAATTATGTTTGATAAAAGAAAATACGCAGGCATATAT
ACCCATTATCATCGTTAATTTGCCGAATGAAGTCCAACAGAACCTGGAATATAGTCAATAAAAG
AATCAGGATGTCAAACGATGTCACCATTGCATTATAAGTTTTATCAGAATTCAAGTAGCAATCT
ACATTTCGTTAATAGCATGTCATTAATGTAAACACATGATCCTTCAAAGAAGCTTGGATAGATG
TGACAACTGAAATTCTTCATCAAAAAATATACTAGCATTGTCAAGATGGTGAATATGACCCCAA
AAAATTGGCTAACCTGAGGGACACCGACCAAGTACCTAACAAGCGTCTTATATACACCTGTTGC
AGAACCAAGTTGTGCCAATTGCACTCGCCTACAGCACAAAATGAAAAATGATATAAAGATTTAC
TGAAATTGAATAGGCATAGGCTGTAAATTAAAATGAGAACCTGTCCATTTGCTGTTTCCACAGC
AATGCATATCGATCACGAATGCTTCCACCAGCATTAACTAAAGCATCTACCTCAGCTTGCTTAT
TTCTCTCAGAGCGTTCTCGCTGTTGCCTGATTAGTGTACCACGGAAATCTTGTGGCATGTAGGT
CATAACTGCAATATTTATAATTTATAAGTGCAGGTCATTAAACACAAATGCACTTGATTAGTAC
TGATACACCAAAAATTGTGGAACTAAAGAATGAACAAGTCAAGAGGAAGAAAAGTAACATTGTT
ATATTCTAGAAAAATTAATTGCTAATATATCTGATGTTATAGTAAACTATGAAAAGTCACATGG
CAAGGACAGAATTTTCATGATAAGATTCAACAATATGTATTCGCATTTAGTTATTATTTTATGC
AATGTATCGCATGAAATAGAAATCAATGGAAAGAACATCAACCTGTATTGAAAACATTATCAGC
ATTTTTTATTTGAAACTGTTCTAACTTCTTCAGCATGTCCTTCAATTTAGTTTCAACATCATCA
AGTATAATAAATGTCTCAGTGTCCTCTGCCGTGGACCTCTGTTGAAGCTGGTTACATGCAGATG
CCAAATGTTAAATAAAGTAAAGTTTCAATCCATTCATTCAAAGTGATCAAAAGCTAATCTTACT
GCAACAGGACGACGAGATTTGTTAAGCAAGAGCAAAATTTCTTCCATTTGTTCTCTATTTTTCC
ACAAGTTTTCATCAATTTTGTGAGCAGGTATCCCATTAGCTTCTTTTTCCAAGAGCTCCTCAT
Conservation Information
Conserved circRNAs NA
PMCS 0.108976865
Functional Information
Coding potential Y
Potential coding position 13841721-13846380(-)
13846303-13846106(-)
Potential amino acid sequence MKLTKVTSALSLPDHTSLFGTTHIRHSSKR*(-)
MEEILLLLNKSRRPVALQQRSTAEDTETFIILDDVETKLKDMLKKLEQFQIKNADNVFNTVMTY
MPQDFRGTLIRQQRERSERNKQAEVDALVNAGGSIRDRYALLWKQQMDRRVQLAQLGSATGVYK
TLVRYLVGVPQVLLDFIRQINDDNGPMEEQRERYGPALYTLTKLVLAIRLYLHVSLARYGQRKI
EKDDIAVLQQAVAIYTEEFEKFTEFIGEVFVNAPFFISAEDAGAESRNSDDYKETIIPAGKTHE
VILSVEAVNSYIAWDFSLQQGALNMVLDIGFHVEYISPSGQKTLILPYRRYEADQGNFCTVSAG
SYKLVWDNSYSSFFKKMRSSWKKKLMGYLLTKLMKTCGKIENKWKKFCSCLTNLVVLLHFNRGP
RQRTLRHLLYLMMLKLN*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017