Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os05g0306000_circ_g.6 |
ID in PlantcircBase | osa_circ_027349 |
Alias | Os_ciR9781 |
Organism | Oryza sativa |
Position | chr5: 13843958-13845747 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | Os05g0306000 |
Parent gene annotation |
GOLD domain containing protein. (Os05t0306000-01) |
Parent gene strand | - |
Alternative splicing | Os05g0306000_circ_g.1 Os05g0306000_circ_g.2 Os05g0306000_circ_g.3 Os05g0306000_circ_g.4 Os05g0306000_circ_g.5 Os05g0306000_circ_g.7 Os05g0306000_circ_g.8 Os05g0306000_circ_g.9 Os05g0306000_circ_g.10 Os05g0306000_circ_g.11 Os05g0306000_circ_g.12 Os05g0306000_circ_g.13 Os05g0306000_circ_g.14 |
Support reads | 2 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os05t0306000-01:7 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.138374097 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
13844173-13845686(-) 13845747-13845744(-) |
Potential amino acid sequence |
MPHSSYLLRMQVLNQGTATTTKKPLFQQERHMSYDLHATRFPWYTNQATARTL*(-) MTYMPQDFRGTLIRQQRERSERNKQAEVDALVNAGGSIRDRYALLWKQQMDRRVQLAQLGSATG VYKTLVRYLVGVPQVLLDFIRQINDDNGPMEEQRERYGPALYTLTKLVLAIRLYLHVSLARYGQ RKIEKDDIAVLQQAVAIYTEEFEKFTEFIGEVFVNAPFFISAEDAGAESRNSDDYKETIIPAGK THEL*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015 |