Detail information of Os04g0430100_circ_g.10


General Information
CircRNA Name Os04g0430100_circ_g.10
ID in PlantcircBase osa_circ_023854
Alias NA
Organism Oryza sativa
Position chr4: 21331350-21331834  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os04g0430150
Parent gene annotation Hypothetical gene. (Os04t0430150-00)
Parent gene strand -
Alternative splicing Os04g0430100_circ_g.8 Os04g0430100_circ_g.9
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   CC-GG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTTTAAACAAGATTTTGTATTTCCTGTTCTGATATTTAGCTAATATATTGATAGTTCAGTTGA
TTTGATGACATCAATGATTTTGGCTTATATTTACCAgtaatcaactactttccctacaagtgtt
tcattattgttctgttgtgtcatgtagcttatttgacttgttacgctgaatacaagacaagcaa
aatccatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTAATCAACTACTTTCCCTACAAGTGTTTCATTATTGTTCTGTTGTGTCATGTAGCTTATTTGA
CTTGTTACGCTGAATACAAGACAAGCAAAATCCATTTTTGTACTGCCTATGATGAATTTATATT
TGGATTTACCATCAACTTAAAAGTTCTAGCAGAATTAACTTGTCTTTTTTACTCGTAGTTGTAT
GCTACATCCGAGATGCCTATATATTTGATGTTGTTCGTTCATGTCTTCTTGGCCTGAAAAAACG
AACTATTGCAGTTCCACATAATGTTTGGGTGGGATTTAGCGAGGTTCATATTTTTCTTTTGTGT
AGAAGTTTTGAACAACCTTGTGATTTTGCTTGTCGAAGGCCCTGTGCACTATGCATACCCTGTT
TGTTTTAAACAAGATTTTGTATTTCCTGTTCTGATATTTAGCTAATATATTGATAGTTCAGTTG
ATTTGATGACATCAATGATTTTGGCTTATATTTACCA
Conservation Information
Conserved circRNAs osi_circ_014368
PMCS 0.115677595
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017