Detail information of BGIOSGA016433_circ_g.2


General Information
CircRNA Name BGIOSGA016433_circ_g.2
ID in PlantcircBase osi_circ_014368
Alias Chr04:21724728_21725203(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 19240176-19240650  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA016433
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   Yes-No
Splicing signals   AT-AG
Number of exons covered BGIOSGA016433-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TACCCTGTTTGTTTTAAACAAGATTTTGTATTTCCTGTTCTGATATTTAGCTAATATATTGATA
GTTCAGTTGATTTGATGACATCAATGATTTTGGCTTggtaatcaactactttccctacaagtgt
ttcattattgttctgttgtgtcatgtagcttatttgacttgttacgctgaatacaagacaagca
aaatccat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTAATCAACTACTTTCCCTACAAGTGTTTCATTATTGTTCTGTTGTGTCATGTAGCTTATTTG
ACTTGTTACGCTGAATACAAGACAAGCAAAATCCATTTTGTACTGCCTATGATGAATTTATATT
TGGATTTACCATCAACTTAAAAGTTCTAGCAGAATTAACTTGTCTTTTTTACTCATAGTTGTAT
GCTACATCCGAGATGCCTATATATTTGATGTTGTTCGTTCATGTCTTCTTGGCCTGAAAAAACG
AACTATTGCAGTTCCACATAATGTTTGGGTGGGATTTAGCGAGGTTCATATTTTTCTTTTGTGT
AGAAGTTTTGAACAACCTTGTGATTTTGCTTGTCGAAGGCCCTGTGCACTATGCATACCCTGTT
TGTTTTAAACAAGATTTTGTATTTCCTGTTCTGATATTTAGCTAATATATTGATAGTTCAGTTG
ATTTGATGACATCAATGATTTTGGCTT
Conservation Information
Conserved circRNAs osa_circ_023853 osa_circ_023854
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021