Detail information of Zm00001d048564_circ_g.1


General Information
CircRNA Name Zm00001d048564_circ_g.1
ID in PlantcircBase zma_circ_003084
Alias circ1446
Organism Zea mays
Position chr9: 158842187-158842810  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRI
Parent gene Zm00001d048564
Parent gene annotation Putative glycogen synthase kinase family protein
Parent gene strand +
Alternative splicing Zm00001d048564_circ_g.2
Support reads 2
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered Zm00001d048564_T003:3
Zm00001d048564_T006:2
Zm00001d048564_T004:3
Zm00001d048564_T008:1
Zm00001d048564_T010:3
Zm00001d048564_T005:3
Zm00001d048564_T002:1
Zm00001d048564_T007:3
Zm00001d048564_T009:3
Zm00001d048564_T001:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAAGATTTTGGGTACTCCAACAAGAGAGGAAATCAGGTGCATGAATCCAAATTATTCTGAATTC
AAGTTCCCTCAGATAAAAGCCCATCCATGGCACAAGggtccctggtgagcctaacatatcgtac
atttgctcgcggtattatagggctcctgaactaatatttggagctacggagtataccactgcaa
tcgatatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTCCCTGGTGAGCCTAACATATCGTACATTTGCTCGCGGTATTATAGGGCTCCTGAACTAATA
TTTGGAGCTACGGAGTATACCACTGCAATCGATATCTGGTCTGTTGGCTGTGTAGTGGCTGAGC
TTCTGATTGGTCAGGTATAGGATCTCAATCCTACAGGTTTACCTTGCTTCCAGCTGATTATTAT
GCCAATTGCTAACCATTTTCTGAGAGGGAAGCAATTTTGTTTTACCATTGTAAAATCTGTCTTT
TTTGGGCCAATTATATAAATTACAAAATTGCATTTTTGGATTTTATGGACATTATGATTTGATC
AACTCCCAGTTAATTGAGACACTTGCTATCTGCTGACAAAATATTGTTGATGTCCACTGGGCCC
CCCCCAATTGCAGCCTTTGTTTCCTGGTGAAAGTGGTGTTGATCAACTGGTGGAAATCATAAAG
GTTTGCATCTGCTATCAAATGCCATGAAACCACTGGTGATACTTTGTAGACTAATGTTTTTCTT
TCCCTTTTGATCCAAGATTTTGGGTACTCCAACAAGAGAGGAAATCAGGTGCATGAATCCAAAT
TATTCTGAATTCAAGTTCCCTCAGATAAAAGCCCATCCATGGCACAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.24124789
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b