Plant Circular RNA Database

Detail information of Os06g0153200_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os06g0153200_circ_g.2
					
						ID in PlantcircBase
						osa_circ_029716
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr6: 2746741-2748316  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os06g0153200						
					
						Parent gene annotation
						
							Similar to cDNA clone:J023129O11, full insert sequence. (Os06t01
53200-01);Similar to phosphate translocator-related. (Os06t01532
00-02)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os06g0153200_circ_g.1 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os06t0153200-01:4
Os06t0153200-02:4

General Information
CircRNA Name	Os06g0153200_circ_g.2
ID in PlantcircBase	osa_circ_029716
Alias	NA
Organism	Oryza sativa
Position	chr6: 2746741-2748316 JBrowse»
Reference genome	IRGSP-1.0.38
Type	u-circRNA
Identification method	CIRCexplorer
Parent gene	Os06g0153200
Parent gene annotation	Similar to cDNA clone:J023129O11, full insert sequence. (Os06t01 53200-01);Similar to phosphate translocator-related. (Os06t01532 00-02)
Parent gene strand	+
Alternative splicing	Os06g0153200_circ_g.1
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os06t0153200-01:4 Os06t0153200-02:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GATGCCAAATACATCATTCTAGATGACTTGGAGGACCAGGATGAGTTTCAGGATGAAGATACAT
AATTTTGCAATGTGGCAACATTTTAACTGTCACTTGgtctaaaaaatccaatcaccctgatgag
tcatgtaaccccagtgatggccatagccaccatggtactctctctcttaatggatccttggagc
gattttca

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 531
Transcript exons: 2746741-2746925,2747002-2747088,2747644-2747738,2748153-
2748316
GTCTAAAAAATCCAATCACCCTGATGAGTCATGTAACCCCAGTGATGGCCATAGCCACCATGGT
ACTCTCTCTCTTAATGGATCCTTGGAGCGATTTTCAGAAGAACACATATTTTGATAGCCCGTGG
CATGTCATGCGCAGTTTTTTACTTATGCTTGTTGGAGGAACCTTGGCCTTTTTCATGGTGTTAA
CAGAGTATGTACTTGTTTCAGCAACCAGTGCTATAACTGTGACAATAGCTGGGGTAGTAAAAGA
AGCTGTAACCATCTTGGTCGCAGTATTTTATTTCCATGATGAGTTCACTTGGTTGAAAGGGCTT
GGTCTCGCCACCATCATGGTTGGAGTTAGCTTATTCAATTGGTACAAGTATGAGAAATACAAAA
AGGGTCACATAAATGAGGATGAAGTTAATTCACCTTCATTCGATGGAGATGCCAAATACATCAT
TCTAGATGACTTGGAGGACCAGGATGAGTTTCAGGATGAAGATACATAATTTTGCAATGTGGCA
ACATTTTAACTGTCACTTG
						
					

						Genomic sequence
						
							GTCTAAAAAATCCAATCACCCTGATGAGTCATGTAACCCCAGTGATGGCCATAGCCACCATGGT
ACTCTCTCTCTTAATGGATCCTTGGAGCGATTTTCAGAAGAACACATATTTTGATAGCCCGTGG
CATGTCATGCGCAGTTTTTTACTTATGCTTGTTGGAGGAACCTTGGCCTTTTTCATGGTAATGA
GCATTTATTTTATCACAAACTTGTTAGTAGTATCATATATGTTGTCATGATGTTTTGTTTTAAA
TGCAGGTGTTAACAGAGTATGTACTTGTTTCAGCAACCAGTGCTATAACTGTGACAATAGCTGG
GGTAGTAAAAGAAGCTGTAACCATCTTGGTAAAATTTAAAATTTGTATATATCTTCCAACTTTC
ATCATCTATAGCAGAATCTGAATTTTATTGACCCCTTGCAAGGTAGTATCTTAATTCTACCTAA
TATTTAAGTGAATACTGCTATTAATAACAGAGAACGCTTCATTTGAACTAGAACCAGGATAATA
AACATGGTCAACCATTGATAACTCATGAAAAGAATGACTAATAGTCTTGAACCGGTTTTTTTGA
GTGTTCCTTTTCTAAATATTTTTTATGCACCCAAGGAAAAAAAATACAACCAGCAGCTTCCTCG
ATTTTAAATCATGATCAGTAAGTTATTCAATTTTTGGCACATCTAAAGTTTAAAGATAGCTTGC
GTAATAAAAGAAGCTGTCAGTAGTGTTACATGACAATCAACGTTTTGTATTAGTAGTATTACCA
TGAATATCATACCATGATTGGCAATATCTCTATATATAAATAGAACCCTATACTCCATAAGTTC
AGATTAGGCATGCTTCTAGGTATAGGCATCTGCAACTGTGATTGAAGAAATTTTCCACCTTGTC
CTTTCAGGTCGCAGTATTTTATTTCCATGATGAGTTCACTTGGTTGAAAGGGCTTGGTCTCGCC
ACCATCATGGTTGGAGTTAGCTTATTCAATTGGTACAAGTAAGTGTCTATTTTTTTGAAACATT
TGCAACTTTAACTCATGGGCAACACAAATGTGAGTCCATAGTTCTTAACTTGTATAGAAAAGGG
CTAATGAACTAACAGAGGAATAGCATTCAGAATAGGTTAACATGAGATAATGCCATAATGAATG
GTAAGCTAGTTCAAAATGCTAGTAGCATATTCCATATTGCTAAACCGATTGTTGTTTTTTACCT
AGTAGTTGATTCTTTTTGCATCAAGTTTGCAATCGTCAACCGATCTTTAGATCTTAAGTCTTAC
GACATCATAATAATCGCACTACACATTAAGCACTTACTGTACCACATATCACATAATTGATTCC
TTGACATGCTATTCTTTTGCCTTTTCATGGTGTGACGATATCTTATTTATTGCTAATCATAATC
ATAGGTATGAGAAATACAAAAAGGGTCACATAAATGAGGATGAAGTTAATTCACCTTCATTCGA
TGGAGATGCCAAATACATCATTCTAGATGACTTGGAGGACCAGGATGAGTTTCAGGATGAAGAT
ACATAATTTTGCAATGTGGCAACATTTTAACTGTCACTTG
						
					

			
		

Sequences
Splice junction sequence	GATGCCAAATACATCATTCTAGATGACTTGGAGGACCAGGATGAGTTTCAGGATGAAGATACAT AATTTTGCAATGTGGCAACATTTTAACTGTCACTTGgtctaaaaaatccaatcaccctgatgag tcatgtaaccccagtgatggccatagccaccatggtactctctctcttaatggatccttggagc gattttca
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 531 Transcript exons: 2746741-2746925,2747002-2747088,2747644-2747738,2748153- 2748316 GTCTAAAAAATCCAATCACCCTGATGAGTCATGTAACCCCAGTGATGGCCATAGCCACCATGGT ACTCTCTCTCTTAATGGATCCTTGGAGCGATTTTCAGAAGAACACATATTTTGATAGCCCGTGG CATGTCATGCGCAGTTTTTTACTTATGCTTGTTGGAGGAACCTTGGCCTTTTTCATGGTGTTAA CAGAGTATGTACTTGTTTCAGCAACCAGTGCTATAACTGTGACAATAGCTGGGGTAGTAAAAGA AGCTGTAACCATCTTGGTCGCAGTATTTTATTTCCATGATGAGTTCACTTGGTTGAAAGGGCTT GGTCTCGCCACCATCATGGTTGGAGTTAGCTTATTCAATTGGTACAAGTATGAGAAATACAAAA AGGGTCACATAAATGAGGATGAAGTTAATTCACCTTCATTCGATGGAGATGCCAAATACATCAT TCTAGATGACTTGGAGGACCAGGATGAGTTTCAGGATGAAGATACATAATTTTGCAATGTGGCA ACATTTTAACTGTCACTTG
Genomic sequence	GTCTAAAAAATCCAATCACCCTGATGAGTCATGTAACCCCAGTGATGGCCATAGCCACCATGGT ACTCTCTCTCTTAATGGATCCTTGGAGCGATTTTCAGAAGAACACATATTTTGATAGCCCGTGG CATGTCATGCGCAGTTTTTTACTTATGCTTGTTGGAGGAACCTTGGCCTTTTTCATGGTAATGA GCATTTATTTTATCACAAACTTGTTAGTAGTATCATATATGTTGTCATGATGTTTTGTTTTAAA TGCAGGTGTTAACAGAGTATGTACTTGTTTCAGCAACCAGTGCTATAACTGTGACAATAGCTGG GGTAGTAAAAGAAGCTGTAACCATCTTGGTAAAATTTAAAATTTGTATATATCTTCCAACTTTC ATCATCTATAGCAGAATCTGAATTTTATTGACCCCTTGCAAGGTAGTATCTTAATTCTACCTAA TATTTAAGTGAATACTGCTATTAATAACAGAGAACGCTTCATTTGAACTAGAACCAGGATAATA AACATGGTCAACCATTGATAACTCATGAAAAGAATGACTAATAGTCTTGAACCGGTTTTTTTGA GTGTTCCTTTTCTAAATATTTTTTATGCACCCAAGGAAAAAAAATACAACCAGCAGCTTCCTCG ATTTTAAATCATGATCAGTAAGTTATTCAATTTTTGGCACATCTAAAGTTTAAAGATAGCTTGC GTAATAAAAGAAGCTGTCAGTAGTGTTACATGACAATCAACGTTTTGTATTAGTAGTATTACCA TGAATATCATACCATGATTGGCAATATCTCTATATATAAATAGAACCCTATACTCCATAAGTTC AGATTAGGCATGCTTCTAGGTATAGGCATCTGCAACTGTGATTGAAGAAATTTTCCACCTTGTC CTTTCAGGTCGCAGTATTTTATTTCCATGATGAGTTCACTTGGTTGAAAGGGCTTGGTCTCGCC ACCATCATGGTTGGAGTTAGCTTATTCAATTGGTACAAGTAAGTGTCTATTTTTTTGAAACATT TGCAACTTTAACTCATGGGCAACACAAATGTGAGTCCATAGTTCTTAACTTGTATAGAAAAGGG CTAATGAACTAACAGAGGAATAGCATTCAGAATAGGTTAACATGAGATAATGCCATAATGAATG GTAAGCTAGTTCAAAATGCTAGTAGCATATTCCATATTGCTAAACCGATTGTTGTTTTTTACCT AGTAGTTGATTCTTTTTGCATCAAGTTTGCAATCGTCAACCGATCTTTAGATCTTAAGTCTTAC GACATCATAATAATCGCACTACACATTAAGCACTTACTGTACCACATATCACATAATTGATTCC TTGACATGCTATTCTTTTGCCTTTTCATGGTGTGACGATATCTTATTTATTGCTAATCATAATC ATAGGTATGAGAAATACAAAAAGGGTCACATAAATGAGGATGAAGTTAATTCACCTTCATTCGA TGGAGATGCCAAATACATCATTCTAGATGACTTGGAGGACCAGGATGAGTTTCAGGATGAAGAT ACATAATTTTGCAATGTGGCAACATTTTAACTGTCACTTG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.252307794

Conservation Information
Conserved circRNAs	NA
PMCS	0.252307794

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							2748240-2746743(+)
						
						Potential amino acid sequence
						
							MTWRTRMSFRMKIHNFAMWQHFNCHLV*(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	2748240-2746743(+)
Potential amino acid sequence	MTWRTRMSFRMKIHNFAMWQHFNCHLV*(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os06g0153200_circ_g.2

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