Detail information of AT5G53860_circ_g.4


General Information
CircRNA Name AT5G53860_circ_g.4
ID in PlantcircBase ath_circ_043995
Alias NA
Organism Arabidpsis thaliana
Position chr5: 21865932-21868394  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder
Parent gene AT5G53860
Parent gene annotation Embryo defective 2737
Parent gene strand +
Alternative splicing ENSRNA049493778_circ_g.1 ENSRNA049493778_circ_g.2 AT5G53740_circ_g.1 5_circ_ag.2 5_circ_ag.3 AT5G53740_circ_g.4 AT5G53740_circ_g.5 5_circ_ag.6 AT5G53760_circ_g.1 AT5G53770_circ_g.1 AT5G53770_circ_g.2 5_circ_ig.3 AT5G53850_circ_g.1 AT5G53850_circ_g.2 AT5G53850_circ_g.3 AT5G53850_circ_g.4 AT5G53850_circ_g.5 AT5G53860_circ_g.1 AT5G53860_circ_g.2 AT5G53860_circ_g.3 AT5G53860_circ_g.5 AT5G53860_circ_g.6 AT5G53860_circ_g.7 AT5G53860_circ_g.8 AT5G53860_circ_g.9 AT5G53860_circ_g.10 AT5G53860_circ_g.11 AT5G53880_circ_g.1 AT5G53905_circ_g.1 5_circ_ag.2 AT5G53905_circ_g.3 5_circ_ag.4 AT5G53920_circ_g.1 AT5G53940_circ_g.1 AT5G53940_circ_g.2 AT5G53970_circ_g.1 AT5G53970_circ_g.2 AT5G54000_circ_g.1 AT5G54060_circ_g.1 ENSRNA049493776_circ_g.1 ENSRNA049493776_circ_g.2 ENSRNA049493776_circ_g.3 5_circ_ag.4 5_circ_ag.5 5_circ_ag.6 AT5G54080_circ_g.1 AT5G54080_circ_g.2 AT5G54080_circ_g.3 AT5G54080_circ_g.4 AT5G54090_circ_g.1 AT5G54090_circ_g.2 AT5G54090_circ_g.3 AT5G54090_circ_g.4 AT5G54100_circ_g.1 AT5G54130_circ_g.1 AT5G54130_circ_g.2 AT5G54130_circ_g.3 AT5G54130_circ_g.4 AT5G54130_circ_g.5 AT5G54160_circ_g.1 AT5G54160_circ_g.2 AT5G54170_circ_g.1 ENSRNA049493783_circ_g.1 ENSRNA049493783_circ_g.2 ENSRNA049493783_circ_g.3 ENSRNA049493783_circ_g.4
Support reads 4
Tissues inflorescences, whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT5G53860.2:10
AT5G53860.3:9
AT5G53860.4:11
AT5G53860.5:10
AT5G53860.1:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGAAATGTTGGAGCAGAAAGTGAGACCTTACATCCAAGACTCAAGCATGGCTGTTCTTCCACAA
CCCATCTTGTTAAAGTCACAGAAGAAAGCTCAAAAGgcggttgctacgcttggaacttatgaca
ttgcattggatttgggaaagaaagtcatatgccaaaggtcagcttcaagatttgatgctttatt
ctgggtca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1011
Transcript exons: 21865932-21865996,21866133-21866231,21866433-21866565,21
866783-21866842,21867010-21867069,21867159-21867281,2186
7641-21867712,21867824-21867961,21868048-21868203,218682
90-21868394
GCGGTTGCTACGCTTGGAACTTATGACATTGCATTGGATTTGGGAAAGAAAGTCATATGCCAAA
GGGATTGCAAAACTTGTAATGGGTGGCAGGCATTACGGTGCACTATGTGCAAAGGAACAGGGAG
TGTTCATTACCAAATCAAAGATTACAACTTGAGAAGTGGAGAGAAACCAACAGCAGATTGTGTC
GCAGATGCTATAGTTGAGAATCGAGCTGAGTTAGTTCATCTTCCCTCCTCCTTCAACCATAGTG
CTCCATTGCCATCAAAAGACTGCCCAACTTGTGATGGAACGGGTGCGATGAGCTGTACTGAGTG
CAAGAACAAGCTGCAAGTCAGAATCTCAGCTGATGATATCATGGAACCTCCATGGAAAGCCTAT
AATGTGCTGAAGAAGATGGATTATCCGTACGAGCACATTGTTCACAGCATGAAAGATCCCAGCA
TTGCAAATTTCTGGTTGATCACTTTGCCTCAGATTGTGGGTGGGTTTGATTATGATGAAGATGT
CAAGAAGAAAATATGGTGGCAATATGAGGAATCTATGCGATATGATCAACTTCGGGACTTGGTG
GCTAAACGCAATCCTGGCTGGGAATATTTGCAGGATGCCTTGGTCTCCATTGATCCTGTCCGTG
CTCGGGAAGACCCCGTCATAGTGAAGAATGTCCCTTATTACAAGGCTAAGAAATCTCTGGAGGC
TGAAGTCACGAAACTCAATCCACCTCCCCGTCCTCAGAATTGGGGTGAACTGAATCTCCCATTG
AATATTTCCTCTTGGAGTGAAGAGGATCTCAAAAACCCGGCAAAACTGTACGAGAAGACAGTTC
TTCTCAATGCTCAAAGAGAAATCGCAGACAAAATCTTGGATGCACAATGGGAAGCTAAATGGCG
TCAAGAGAAGGTGGAGGAAATGTTGGAGCAGAAAGTGAGACCTTACATCCAAGACTCAAGCATG
GCTGTTCTTCCACAACCCATCTTGTTAAAGTCACAGAAGAAAGCTCAAAAG

Transcript length: 1042
Transcript exons: 21865932-21866027,21866133-21866231,21866433-21866565,21
866783-21866842,21867010-21867069,21867159-21867281,2186
7641-21867712,21867824-21867961,21868048-21868203,218682
90-21868394
GCGGTTGCTACGCTTGGAACTTATGACATTGCATTGGATTTGGGAAAGAAAGTCATATGCCAAA
GGTCAGCTTCAAGATTTGATGCTTTATTCTGGGGATTGCAAAACTTGTAATGGGTGGCAGGCAT
TACGGTGCACTATGTGCAAAGGAACAGGGAGTGTTCATTACCAAATCAAAGATTACAACTTGAG
AAGTGGAGAGAAACCAACAGCAGATTGTGTCGCAGATGCTATAGTTGAGAATCGAGCTGAGTTA
GTTCATCTTCCCTCCTCCTTCAACCATAGTGCTCCATTGCCATCAAAAGACTGCCCAACTTGTG
ATGGAACGGGTGCGATGAGCTGTACTGAGTGCAAGAACAAGCTGCAAGTCAGAATCTCAGCTGA
TGATATCATGGAACCTCCATGGAAAGCCTATAATGTGCTGAAGAAGATGGATTATCCGTACGAG
CACATTGTTCACAGCATGAAAGATCCCAGCATTGCAAATTTCTGGTTGATCACTTTGCCTCAGA
TTGTGGGTGGGTTTGATTATGATGAAGATGTCAAGAAGAAAATATGGTGGCAATATGAGGAATC
TATGCGATATGATCAACTTCGGGACTTGGTGGCTAAACGCAATCCTGGCTGGGAATATTTGCAG
GATGCCTTGGTCTCCATTGATCCTGTCCGTGCTCGGGAAGACCCCGTCATAGTGAAGAATGTCC
CTTATTACAAGGCTAAGAAATCTCTGGAGGCTGAAGTCACGAAACTCAATCCACCTCCCCGTCC
TCAGAATTGGGGTGAACTGAATCTCCCATTGAATATTTCCTCTTGGAGTGAAGAGGATCTCAAA
AACCCGGCAAAACTGTACGAGAAGACAGTTCTTCTCAATGCTCAAAGAGAAATCGCAGACAAAA
TCTTGGATGCACAATGGGAAGCTAAATGGCGTCAAGAGAAGGTGGAGGAAATGTTGGAGCAGAA
AGTGAGACCTTACATCCAAGACTCAAGCATGGCTGTTCTTCCACAACCCATCTTGTTAAAGTCA
CAGAAGAAAGCTCAAAAG

Transcript length: 1122
Transcript exons: 21865932-21865996,21866133-21866231,21866433-21866565,21
866783-21866842,21867010-21867069,21867159-21867281,2186
7416-21867526,21867641-21867712,21867824-21867961,218680
48-21868203,21868290-21868394
GCGGTTGCTACGCTTGGAACTTATGACATTGCATTGGATTTGGGAAAGAAAGTCATATGCCAAA
GGGATTGCAAAACTTGTAATGGGTGGCAGGCATTACGGTGCACTATGTGCAAAGGAACAGGGAG
TGTTCATTACCAAATCAAAGATTACAACTTGAGAAGTGGAGAGAAACCAACAGCAGATTGTGTC
GCAGATGCTATAGTTGAGAATCGAGCTGAGTTAGTTCATCTTCCCTCCTCCTTCAACCATAGTG
CTCCATTGCCATCAAAAGACTGCCCAACTTGTGATGGAACGGGTGCGATGAGCTGTACTGAGTG
CAAGAACAAGCTGCAAGTCAGAATCTCAGCTGATGATATCATGGAACCTCCATGGAAAGCCTAT
AATGTGCTGAAGAAGATGGATTATCCGTACGAGCACATTGTTCACAGCATGAAAGATCCCAGCA
TTGCAAATTTCTGGTTGATCACTTTGCCTCAGATTGTGGGTGGGTTTGATTATGATGAAGATGT
CAAGAAGAAAATATGGTGGCAATATGAGTTGAATCTTCTTAATCCTCATTTGGGATGGTTTTGC
TACACCAACATAGTTTCGATTCCATATCTGGATAGGTTTGTGCTATGGAATTGGAGACATTTGT
GGGATACTGATGAATCTATGCGATATGATCAACTTCGGGACTTGGTGGCTAAACGCAATCCTGG
CTGGGAATATTTGCAGGATGCCTTGGTCTCCATTGATCCTGTCCGTGCTCGGGAAGACCCCGTC
ATAGTGAAGAATGTCCCTTATTACAAGGCTAAGAAATCTCTGGAGGCTGAAGTCACGAAACTCA
ATCCACCTCCCCGTCCTCAGAATTGGGGTGAACTGAATCTCCCATTGAATATTTCCTCTTGGAG
TGAAGAGGATCTCAAAAACCCGGCAAAACTGTACGAGAAGACAGTTCTTCTCAATGCTCAAAGA
GAAATCGCAGACAAAATCTTGGATGCACAATGGGAAGCTAAATGGCGTCAAGAGAAGGTGGAGG
AAATGTTGGAGCAGAAAGTGAGACCTTACATCCAAGACTCAAGCATGGCTGTTCTTCCACAACC
CATCTTGTTAAAGTCACAGAAGAAAGCTCAAAAG

Transcript length: 729
Transcript exons: 21865932-21865996,21866133-21866231,21866433-21866565,21
866783-21866842,21867010-21867069,21867159-21867281,2186
7641-21867712,21867824-21867919,21868374-21868394
GCGGTTGCTACGCTTGGAACTTATGACATTGCATTGGATTTGGGAAAGAAAGTCATATGCCAAA
GGGATTGCAAAACTTGTAATGGGTGGCAGGCATTACGGTGCACTATGTGCAAAGGAACAGGGAG
TGTTCATTACCAAATCAAAGATTACAACTTGAGAAGTGGAGAGAAACCAACAGCAGATTGTGTC
GCAGATGCTATAGTTGAGAATCGAGCTGAGTTAGTTCATCTTCCCTCCTCCTTCAACCATAGTG
CTCCATTGCCATCAAAAGACTGCCCAACTTGTGATGGAACGGGTGCGATGAGCTGTACTGAGTG
CAAGAACAAGCTGCAAGTCAGAATCTCAGCTGATGATATCATGGAACCTCCATGGAAAGCCTAT
AATGTGCTGAAGAAGATGGATTATCCGTACGAGCACATTGTTCACAGCATGAAAGATCCCAGCA
TTGCAAATTTCTGGTTGATCACTTTGCCTCAGATTGTGGGTGGGTTTGATTATGATGAAGATGT
CAAGAAGAAAATATGGTGGCAATATGAGGAATCTATGCGATATGATCAACTTCGGGACTTGGTG
GCTAAACGCAATCCTGGCTGGGAATATTTGCAGGATGCCTTGGTCTCCATTGATCCTGTCCGTG
CTCGGGAAGACCCCGTCATAGTGAAGAATGTCCCTTATTACAAGGCTAAGAAATCTCTGGAGGC
TGAATCACAGAAGAAAGCTCAAAAG

Transcript length: 951
Transcript exons: 21865932-21865996,21866133-21866231,21866433-21866565,21
867010-21867069,21867159-21867281,21867641-21867712,2186
7824-21867961,21868048-21868203,21868290-21868394
GCGGTTGCTACGCTTGGAACTTATGACATTGCATTGGATTTGGGAAAGAAAGTCATATGCCAAA
GGGATTGCAAAACTTGTAATGGGTGGCAGGCATTACGGTGCACTATGTGCAAAGGAACAGGGAG
TGTTCATTACCAAATCAAAGATTACAACTTGAGAAGTGGAGAGAAACCAACAGCAGATTGTGTC
GCAGATGCTATAGTTGAGAATCGAGCTGAGTTAGTTCATCTTCCCTCCTCCTTCAACCATAGTG
CTCCATTGCCATCAAAAGACTGCCCAACTTGTGATGGAACGATCATGGAACCTCCATGGAAAGC
CTATAATGTGCTGAAGAAGATGGATTATCCGTACGAGCACATTGTTCACAGCATGAAAGATCCC
AGCATTGCAAATTTCTGGTTGATCACTTTGCCTCAGATTGTGGGTGGGTTTGATTATGATGAAG
ATGTCAAGAAGAAAATATGGTGGCAATATGAGGAATCTATGCGATATGATCAACTTCGGGACTT
GGTGGCTAAACGCAATCCTGGCTGGGAATATTTGCAGGATGCCTTGGTCTCCATTGATCCTGTC
CGTGCTCGGGAAGACCCCGTCATAGTGAAGAATGTCCCTTATTACAAGGCTAAGAAATCTCTGG
AGGCTGAAGTCACGAAACTCAATCCACCTCCCCGTCCTCAGAATTGGGGTGAACTGAATCTCCC
ATTGAATATTTCCTCTTGGAGTGAAGAGGATCTCAAAAACCCGGCAAAACTGTACGAGAAGACA
GTTCTTCTCAATGCTCAAAGAGAAATCGCAGACAAAATCTTGGATGCACAATGGGAAGCTAAAT
GGCGTCAAGAGAAGGTGGAGGAAATGTTGGAGCAGAAAGTGAGACCTTACATCCAAGACTCAAG
CATGGCTGTTCTTCCACAACCCATCTTGTTAAAGTCACAGAAGAAAGCTCAAAAG

Genomic sequence GCGGTTGCTACGCTTGGAACTTATGACATTGCATTGGATTTGGGAAAGAAAGTCATATGCCAAA
GGTCAGCTTCAAGATTTGATGCTTTATTCTGGGTCAGAGAATTTTTGAGAAACCTCAGTTCTCA
CACTTCCTCGCTATGTTTTTGGTTCTACTGTTTGAGTTCATCCGATGAGATGAAAACATTTTTT
GTTGGTCAGGGATTGCAAAACTTGTAATGGGTGGCAGGCATTACGGTGCACTATGTGCAAAGGA
ACAGGGAGTGTTCATTACCAAATCAAAGATTACAACTTGAGAAGGTGGGATTATCTCTTGTTTA
ACCCAAGTTATATCGCTTAAACTACTAGGCTTCATGAATAGATCCACTTTATTCTGACGGTCTC
TTTGTGTTCTCTGTATATTAATGTCGACAGTTCCATTTGGCAATGCTTAAGCTATCCTAGTGAT
ATTCTAACAGATAAAAGGATTTAAAGATTTATCCTTTCTGTCTTTACTTGTAGTGGAGAGAAAC
CAACAGCAGATTGTGTCGCAGATGCTATAGTTGAGAATCGAGCTGAGTTAGTTCATCTTCCCTC
CTCCTTCAACCATAGTGCTCCATTGCCATCAAAAGACTGCCCAACTTGTGATGGAACGGTAAGC
TTTTTAATCTCGCTCTTAATGCTCTAGGCTTCTGTAAATGTATTTGCACTGCTATATTTGATAC
TGATTTGGTTTATATCTCCAAATTGTCAACTATGCTAATTTCATATCCACGTAAAAAGGTGCTT
GTTTGTGTTAAGAGTGATCGCGATAGGCTGTTTTTCATCAGTGTATGCTTAGAAATTTGATGGA
ACATCTATTGATATTGAAGGGTGCGATGAGCTGTACTGAGTGCAAGAACAAGCTGCAAGTCAGA
ATCTCAGCTGATGATGTATGTTTTGAGTCTGCTATTACGTCTTCTCAGCTTAACATCTACATAA
ATCCCCTGTGGGATGTATATATACTAGTTATTAGAAATGAAATGCACATGGAGAGGTAGTTTGG
TTTTGAACAAAACTATCACTTGCTAAATACCTTTACTGACGATTCATTTTGCAGATCATGGAAC
CTCCATGGAAAGCCTATAATGTGCTGAAGAAGATGGATTATCCGTACGAGGTGAGCACCACAAA
GTCTATTTATCAACCCAACAGCTTGCTATGTTTACTACATCTTTACCGTCTTATGAGTCATATT
TTCTATTTCAGCACATTGTTCACAGCATGAAAGATCCCAGCATTGCAAATTTCTGGTTGATCAC
TTTGCCTCAGATTGTGGGTGGGTTTGATTATGATGAAGATGTCAAGAAGAAAATATGGTGGCAA
TATGAGGTTAGTATCTCTTTCTACATATGTAGATCTCCTTCAGCATGAGTTATTTGCCAGGCTT
CACTTTTGAGGTTATGGTCTTCTAGAGGCTTAAAGCATGCATACCGTAAAAGGTTTAGTCTACA
ATTACCTGATAGTTGAATCTTCTTAATCCTCATTTGGGATGGTTTTGCTACACCAACATAGTTT
CGATTCCATATCTGGATAGGTTTGTGCTATGGAATTGGAGACATTTGTGGGATACTGATGTACT
CAGGGATCTGTATTGCATAGAATTTTCTGTTCAATAGGAACTATTGTTGTTGAATACTTCAGCT
TTAAGCATCAATGAGAGTTTAACTATTTATGTCTTCTGTGATCAGGAATCTATGCGATATGATC
AACTTCGGGACTTGGTGGCTAAACGCAATCCTGGCTGGGAATATTTGCAGGATGTAAGATCGCC
TATTTGTGGTTTTAAAGTTTAGGCAAATCTGGGGAACTACATTGGAATATGTTAGCTGAAGAAG
TTTAGCAATCACCATATAGTTGTCATGGTTTTACAGGCCTTGGTCTCCATTGATCCTGTCCGTG
CTCGGGAAGACCCCGTCATAGTGAAGAATGTCCCTTATTACAAGGCTAAGAAATCTCTGGAGGC
TGAAGTCACGAAACTCAATCCACCTCCCCGTCCTCAGAATTGGGGTGTAAGCTTTCTTCTTCTT
TTTGGTTTTAGCATCACAGTTCCTGAGACCACGGGTATAGTTAAGAACTAACTGCTGAACATGT
ACAGGAACTGAATCTCCCATTGAATATTTCCTCTTGGAGTGAAGAGGATCTCAAAAACCCGGCA
AAACTGTACGAGAAGACAGTTCTTCTCAATGCTCAAAGAGAAATCGCAGACAAAATCTTGGATG
CACAATGGGAAGCTAAATGGCGTCAAGAGAAGGTTAATCAAGGAACTTTTTTACACAATTCGGT
ATTCATATCACATTCACGACTCCAATGCATACCGTTTATCTTTTTGATTTGTAGGTGGAGGAAA
TGTTGGAGCAGAAAGTGAGACCTTACATCCAAGACTCAAGCATGGCTGTTCTTCCACAACCCAT
CTTGTTAAAGTCACAGAAGAAAGCTCAAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.179534044
Functional Information
Coding potential Y
Potential coding position 21866176-21868391(+)
Potential amino acid sequence MCKGTGSVHYQIKDYNLRSGEKPTADCVADAIVENRAELVHLPSSFNHSAPLPSKDCPTCDGTG
AMSCTECKNKLQVRISADDIMEPPWKAYNVLKKMDYPYEHIVHSMKDPSIANFWLITLPQIVGG
FDYDEDVKKKIWWQYEESMRYDQLRDLVAKRNPGWEYLQDALVSIDPVRAREDPVIVKNVPYYK
AKKSLEAEVTKLNPPPRPQNWGELNLPLNISSWSEEDLKNPAKLYEKTVLLNAQREIADKILDA
QWEAKWRQEKVEEMLEQKVRPYIQDSSMAVLPQPILLKSQKKAQKAVATLGTYDIALDLGKKVI
CQRDCKTCNGWQALRCTMCKGTGSVHYQIKDYNLRSGEKPTADCVADAIVENRAELVHLPSSFN
HSAPLPSKDCPTCDGTGAMSCTECKNKLQVRISADDIMEPPWKAYNVLKKMDYPYEHIVHSMKD
PSIANFWLITLPQIVGGFDYDEDVKKKIWWQYEESMRYDQLRDLVAKRNPGWEYLQDALVSIDP
VRAREDPVIVKNVPYYKAKKSLEAEVTKLNPPPRPQNWGELNLPLNISSWSEEDLKNPAKLYEK
TVLLNAQREIADKILDAQWEAKWRQEKVEEMLEQKVRPYIQDSSMAVLPQPILLKSQKKAQKAV
ATLGTYDIALDLGKKVICQRDCKTCNGWQALRCTMCKGTGSVHYQIKDYNLRSGEKPTADCVAD
AIVENRAELVHLPSSFNHSAPLPSKDCPTCDGTGAMSCTECKNKLQVRISADDIMEPPWKAYNV
LKKMDYPYEHIVHSMKDPSIANFWLITLPQIVGGFDYDEDVKKKIWWQYEESMRYDQLRDLVAK
RNPGWEYLQDALVSIDPVRAREDPVIVKNVPYYKAKKSLEAEVTKLNPPPRPQNWGELNLPLNI
SSWSEEDLKNPAKLYEKTVLLNAQREIADKILDAQWEAKWRQEKVEEMLEQKVRPYIQDSSMAV
LPQPILLKSQKKAQKAVATLGTYDIALDLGKKVICQRDCKTCNGWQALRCTMCKGTGSVHYQIK
DYNLRSGEKPTADCVADAIVENRAELVHLPSSFNHSAPLPSKDCPTCDGTGAMSCTECKNKLQV
RISADDIMEPPWKAYNVLKKMDYPYEHIVHSMKDPSIANFWLITLPQIVGGFDYDEDVKKKIWW
QYEESMRYDQLRDLVAKRNPGWEYLQDALVSIDPVRAREDPVIVKNVPYYKAKKSLEAEVTKLN
PPPRPQNWGELNLPLNISSWSEEDLKNPAKLYEKTVLLNAQREIADKILDAQWEAKWRQEKVEE
MLEQKVRPYIQDSSMAVLPQPILLKSQKKAQK(+)
Sponge-miRNAs ath-miR1886.2
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017