Detail information of Os10g0485000_circ_g.3


General Information
CircRNA Name Os10g0485000_circ_g.3
ID in PlantcircBase osa_circ_007188
Alias NA
Organism Oryza sativa
Position chr10: 18323605-18323737  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os10g0485000
Parent gene annotation FF domain containing protein. (Os10t0485000-01)
Parent gene strand -
Alternative splicing Os10g0485000_circ_g.1 Os10g0485000_circ_g.2
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   TT-AT
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTGCCTCTTTCATCTTTTGGCACAACATGTTTACTTGTATGGTGATAAGAGTACAAGGACTTT
ACaatctgtagatgtatacaacaaggtcgttgcagggtaaattgaatgccatttttttcatgaa
taaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AATCTGTAGATGTATACAACAAGGTCGTTGCAGGGTAAATTGAATGCCATTTTTTTCATGAATA
AGATCTGCCTCTTTCATCTTTTGGCACAACATGTTTACTTGTATGGTGATAAGAGTACAAGGAC
TTTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.109649123
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017