Plant Circular RNA Database

Detail information of Os07g0507200_circ_g.10

			
						 General Information
					
						CircRNA Name
						Os07g0507200_circ_g.10
					
						ID in PlantcircBase
						osa_circ_033969
					
						Alias
						Os_ciR5561
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr7: 19254647-19255718  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer, find_circ
					
						Parent gene
						
							Os07g0507200						
					
						Parent gene annotation
						
							Cell cycle regulated microtubule associated protein domain conta
ining protein. (Os07t0507200-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os07g0507200_circ_g.1 Os07g0507200_circ_g.2 Os07g0507200_circ_g.3 Os07g0507200_circ_g.4 Os07g0507200_circ_g.5 Os07g0507200_circ_g.6 Os07g0507200_circ_g.7 Os07g0507200_circ_g.8 Os07g0507200_circ_g.9 Os07g0507200_circ_g.11 Os07g0507200_circ_g.12 Os07g0507200_circ_g.13 Os07g0507200_circ_g.14 Os07g0507200_circ_g.15 Os07g0507200_circ_g.16 						
					
						Support reads
						3/9
					
						Tissues
						root/shoot, root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os07t0507200-01:5

General Information
CircRNA Name	Os07g0507200_circ_g.10
ID in PlantcircBase	osa_circ_033969
Alias	Os_ciR5561
Organism	Oryza sativa
Position	chr7: 19254647-19255718 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRCexplorer, find_circ
Parent gene	Os07g0507200
Parent gene annotation	Cell cycle regulated microtubule associated protein domain conta ining protein. (Os07t0507200-01)
Parent gene strand	-
Alternative splicing	Os07g0507200_circ_g.1 Os07g0507200_circ_g.2 Os07g0507200_circ_g.3 Os07g0507200_circ_g.4 Os07g0507200_circ_g.5 Os07g0507200_circ_g.6 Os07g0507200_circ_g.7 Os07g0507200_circ_g.8 Os07g0507200_circ_g.9 Os07g0507200_circ_g.11 Os07g0507200_circ_g.12 Os07g0507200_circ_g.13 Os07g0507200_circ_g.14 Os07g0507200_circ_g.15 Os07g0507200_circ_g.16
Support reads	3/9
Tissues	root/shoot, root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os07t0507200-01:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CTCTGACAGCACGGACCCTGTGGGAGGTCTGGAACTCAGGTTCCTTTGGCCTTGTTAGCATCAG
CTTTGTTCTTCTTTGTAATGCGGTTGCTGCATCCTCcttatcaaatagatccacaactgcagga
ggacccaagcgatcatcggtagagaaatggaattccttgggggctgttggttgagcctttagat
gtggaaac

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 724
Transcript exons: 19254647-19254775,19254863-19254941,19255030-19255305,19
255391-19255453,19255542-19255718
CTTATCAAATAGATCCACAACTGCAGGAGGACCCAAGCGATCATCGGTAGAGAAATGGAATTCC
TTGGGGGCTGTTGGTTGAGCCTTTAGATGTGGAAACACACCAATATCACCCTTGCTCTCGAGAA
TCTTTTTGTTCAGTGGCTTTGCCTTGAACTTGGGAGCCTTTTCTAATTCTTCTAGTTCCAATTC
CTGAGAACTTTTCACCCTTGGTGGTCTAGCTCGTAATGCTGTCTCAAGTTGGGGTGGTTTTGGC
GCTGTCAAGGTCAGTGGCTTACTGCTCTGACTCTGCAAGATTTGATTAAACTTTCAGTAATGCC
AAGAATTTTAATTTTTAGGAGACTAATAAGAAGAAGAATTTACATACTGATATTAGCAACCAGG
TTAAGTGAAGGGAGCTTACCCTGATAGTCCCCACGGAAGAAGCTTCGGAACAGGTGTCTGCATG
TCGTGTAGCTCTCTCCATCGTTTTAAGATGAAACTCATTAAATTCAGGAAGCTGTGGAGCTTTC
CTTGGAAGAGGAGGAAATGAAGGGGCCTCCGCAATTTTTTTGTTAAACGGCCGTGCTCTGAACT
TCGGAATTTTGGCTAGCATCTCCTCCTCTAGCTCAGCAGAGCTTTTCACTCTGACAGCACGGAC
CCTGTGGGAGGTCTGGAACTCAGGTTCCTTTGGCCTTGTTAGCATCAGCTTTGTTCTTCTTTGT
AATGCGGTTGCTGCATCCTC
						
					

						Genomic sequence
						
							CTTATCAAATAGATCCACAACTGCAGGAGGACCCAAGCGATCATCGGTAGAGAAATGGAATTCC
TTGGGGGCTGTTGGTTGAGCCTTTAGATGTGGAAACACACCAATATCACCCTTGCTCTCGAGAA
TCTGCAAGAAATGATGTTCAGACTGGATGTTTTGAAGCACAATGCAATCAATGTATCAAATGTA
CAAGCTTCAAGAAGATAAGGAGACCTTTTTGTTCAGTGGCTTTGCCTTGAACTTGGGAGCCTTT
TCTAATTCTTCTAGTTCCAATTCCTGAGAACTTTTCACCCTGCAGAAAGATGATGTTAGAGTAA
TCGAAAATAATCAATAACATAAAATGGCTTGTTTTCTGAATGATGCAAGTGGCAAAGGGAAACC
TTGGTGGTCTAGCTCGTAATGCTGTCTCAAGTTGGGGTGGTTTTGGCGCTGTCAAGGTCAGTGG
CTTACTGCTCTGACTCTGCAAGATTTGATTAAACTTTCAGTAATGCCAAGAATTTTAATTTTTA
GGAGACTAATAAGAAGAAGAATTTACATACTGATATTAGCAACCAGGTTAAGTGAAGGGAGCTT
ACCCTGATAGTCCCCACGGAAGAAGCTTCGGAACAGGTGTCTGCATGTCGTGTAGCTCTCTCCA
TCGTTTTAAGATGAAACTCCTGTAGGTGTTGGAAAGGAATAACTGAATCAGCCAAACAAAGCTG
TGGAGCTCATAAATTTCTGAATCAGCCAAACAAGACGTACATTAAATTCAGGAAGCTGTGGAGC
TTTCCTTGGAAGAGGAGGAAATGAAGGGGCCTCCGCAATCTGAAAGGAGAAGCAAACAAATAGT
TAGTCTTCAGATCCTGGATTGAGTAGTTAGTATAATCAAAACCAAAGCAAACAAATTTCTCACT
TTTTTGTTAAACGGCCGTGCTCTGAACTTCGGAATTTTGGCTAGCATCTCCTCCTCTAGCTCAG
CAGAGCTTTTCACTCTGACAGCACGGACCCTGTGGGAGGTCTGGAACTCAGGTTCCTTTGGCCT
TGTTAGCATCAGCTTTGTTCTTCTTTGTAATGCGGTTGCTGCATCCTC
						
					

			
		

Sequences
Splice junction sequence	CTCTGACAGCACGGACCCTGTGGGAGGTCTGGAACTCAGGTTCCTTTGGCCTTGTTAGCATCAG CTTTGTTCTTCTTTGTAATGCGGTTGCTGCATCCTCcttatcaaatagatccacaactgcagga ggacccaagcgatcatcggtagagaaatggaattccttgggggctgttggttgagcctttagat gtggaaac
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 724 Transcript exons: 19254647-19254775,19254863-19254941,19255030-19255305,19 255391-19255453,19255542-19255718 CTTATCAAATAGATCCACAACTGCAGGAGGACCCAAGCGATCATCGGTAGAGAAATGGAATTCC TTGGGGGCTGTTGGTTGAGCCTTTAGATGTGGAAACACACCAATATCACCCTTGCTCTCGAGAA TCTTTTTGTTCAGTGGCTTTGCCTTGAACTTGGGAGCCTTTTCTAATTCTTCTAGTTCCAATTC CTGAGAACTTTTCACCCTTGGTGGTCTAGCTCGTAATGCTGTCTCAAGTTGGGGTGGTTTTGGC GCTGTCAAGGTCAGTGGCTTACTGCTCTGACTCTGCAAGATTTGATTAAACTTTCAGTAATGCC AAGAATTTTAATTTTTAGGAGACTAATAAGAAGAAGAATTTACATACTGATATTAGCAACCAGG TTAAGTGAAGGGAGCTTACCCTGATAGTCCCCACGGAAGAAGCTTCGGAACAGGTGTCTGCATG TCGTGTAGCTCTCTCCATCGTTTTAAGATGAAACTCATTAAATTCAGGAAGCTGTGGAGCTTTC CTTGGAAGAGGAGGAAATGAAGGGGCCTCCGCAATTTTTTTGTTAAACGGCCGTGCTCTGAACT TCGGAATTTTGGCTAGCATCTCCTCCTCTAGCTCAGCAGAGCTTTTCACTCTGACAGCACGGAC CCTGTGGGAGGTCTGGAACTCAGGTTCCTTTGGCCTTGTTAGCATCAGCTTTGTTCTTCTTTGT AATGCGGTTGCTGCATCCTC
Genomic sequence	CTTATCAAATAGATCCACAACTGCAGGAGGACCCAAGCGATCATCGGTAGAGAAATGGAATTCC TTGGGGGCTGTTGGTTGAGCCTTTAGATGTGGAAACACACCAATATCACCCTTGCTCTCGAGAA TCTGCAAGAAATGATGTTCAGACTGGATGTTTTGAAGCACAATGCAATCAATGTATCAAATGTA CAAGCTTCAAGAAGATAAGGAGACCTTTTTGTTCAGTGGCTTTGCCTTGAACTTGGGAGCCTTT TCTAATTCTTCTAGTTCCAATTCCTGAGAACTTTTCACCCTGCAGAAAGATGATGTTAGAGTAA TCGAAAATAATCAATAACATAAAATGGCTTGTTTTCTGAATGATGCAAGTGGCAAAGGGAAACC TTGGTGGTCTAGCTCGTAATGCTGTCTCAAGTTGGGGTGGTTTTGGCGCTGTCAAGGTCAGTGG CTTACTGCTCTGACTCTGCAAGATTTGATTAAACTTTCAGTAATGCCAAGAATTTTAATTTTTA GGAGACTAATAAGAAGAAGAATTTACATACTGATATTAGCAACCAGGTTAAGTGAAGGGAGCTT ACCCTGATAGTCCCCACGGAAGAAGCTTCGGAACAGGTGTCTGCATGTCGTGTAGCTCTCTCCA TCGTTTTAAGATGAAACTCCTGTAGGTGTTGGAAAGGAATAACTGAATCAGCCAAACAAAGCTG TGGAGCTCATAAATTTCTGAATCAGCCAAACAAGACGTACATTAAATTCAGGAAGCTGTGGAGC TTTCCTTGGAAGAGGAGGAAATGAAGGGGCCTCCGCAATCTGAAAGGAGAAGCAAACAAATAGT TAGTCTTCAGATCCTGGATTGAGTAGTTAGTATAATCAAAACCAAAGCAAACAAATTTCTCACT TTTTTGTTAAACGGCCGTGCTCTGAACTTCGGAATTTTGGCTAGCATCTCCTCCTCTAGCTCAG CAGAGCTTTTCACTCTGACAGCACGGACCCTGTGGGAGGTCTGGAACTCAGGTTCCTTTGGCCT TGTTAGCATCAGCTTTGTTCTTCTTTGTAATGCGGTTGCTGCATCCTC

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_017109 						
					
						PMCS
						0.346921657

Conservation Information
Conserved circRNAs	osi_circ_017109
PMCS	0.346921657

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							19255701-19254693(+)
19254692-19255681(-)
						
						Potential amino acid sequence
						
							MRLLHPPYQIDPQLQEDPSDHR*(+)
MIAWVLLQLWIYLIRRMQQPHYKEEQS*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	19255701-19254693(+) 19254692-19255681(-)
Potential amino acid sequence	MRLLHPPYQIDPQLQEDPSDHR(+) MIAWVLLQLWIYLIRRMQQPHYKEEQS(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os07g0507200_circ_g.10

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