Detail information of BGIOSGA016630_circ_g.2


General Information
CircRNA Name BGIOSGA016630_circ_g.2
ID in PlantcircBase osi_circ_005566
Alias 4:22668844|22669261
Organism Oryza sativa ssp. indica
Position chr4: 22668844-22669261  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA016630
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016630_circ_g.1
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered BGIOSGA016630-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTATCTTCAACATTGTTCTAGGATATCATCCACATCACGTAGATATGCTGTCTTAATAACTGA
AATTTCAGGAGAAGGCACTAGAACAGCTTAAAGTTAaaaataaatgctgttgaggaagcacttt
agtttatgccatcataaattttatcaacacttgctgaaaggctcacaatttgtgcttgttatgg
atagcttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AAAATAAATGCTGTTGAGGAAGCACTTTAGTTTATGCCATCATAAATTTTATCAACACTTGCTG
AAAGGCTCACAATTTGTGCTTGTTATGGATAGCTTTCCGTTCTTCTTCTAGCATACATGAGTTA
TCATTTTGCTTGAGAGTACTATTCTGAAATATAATCAAAGTTGTTCAGTTATATTCTTGTTGTT
AAAAATCGTCCTTTATCCCTGAAGGATCGCTGATGCTGAAGAGAATTTGGGTGAGAGTGAAGTG
CGTGAAGCCCATCTAGCCAAATCGTTGTATTTCATAAGGGTTGGAGAGAAGGTAATGTATCATG
TATCTTCAACATTGTTCTAGGATATCATCCACATCACGTAGATATGCTGTCTTAATAACTGAAA
TTTCAGGAGAAGGCACTAGAACAGCTTAAAGTTA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021